Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00582 ATGTGGCATAACAACCACCGACCACAGATTACATCAATATCACTGTCTAAGCAAGTAGTGTACTACAATTCTATATATGAAGTTTTGGTGAAAGATTTGGGAGTCAATAAAGCAAAGGCACATGCATCCAAGTCTCTATATTTGATAGAAATTGGAAGTAACGATATATTTGCCTACTTTGCATCATCCAACCTTCGCAAAATCTACACTCCTCCACAGTATTTGGATTTAATGTCTCACCATTTCGAGAAGCAACTAAAGCTATTGTATGAAAACGGAGCACGTAAATTGGTGGTAATTGGTGTGGGGGTAATTGGATGCACCCCAGCAATGAGATACCAAAACATCACTGAAGGATGCAATTCTGAAATGAATGGGTGGGCATTTGTGTTCAATCAACATCTCACATCAATGCTTAAGAGACTCAAAGATGAGTTATTTGGCTTTCATTTTTCCTACTTTGATGGCTTCTCTATCATGCTTAGCTCCATTCACAATCCCACTTCTTTTGGATTTAGTGAAGTTAAAGCAGCATGTTGTGGGTCTGGTAGACTAAAGGCTGAAGTGGCTTGCATTCCAAAAGTATCTTATTGCAACAACAGAGACAAGCATTTGTTTTGGGATAAATACCATCCAACACAACAAGCTCATCACTTTTTCTCTGATTTGATATTCAATGGGTCACAAAGATACACTTTTCCCATCAATGTCTACAAATCTGTGGAGAAAGCTCGAGCTCATGGAGCATTGGTGATCCAAAAACCCCAAAAAGTTAACCAAACCATCTTTGCATTTGTGCAAGATCATAATGGCTATAAGTTTAAGCTCATTCAAAGGACCTCTTTAACTGATCCTCTTGTTGAAATCATGCTTCATGTACAAGATTTGAATCCTTCCCTCAACTTCTACACAAAGGCATTGGGAATGAAGTTGTTTGAGAGCCAAAACAATTCAACAGGACAGATTGTTTTGGGGACTTTGGGCTATGGAATAAACCAAAGTAAAACAACAGTGTTGCAATTACAAAAGAGAAAAAACATCCCTCGTGATGATGGACGAGATGGCTATTCAATGGTGTATATTGGTACTGACAATGTAAACAAGAGTGCTGAAGCTGCCAAGTTGGTAATGAAAGAGCTTGGCGGTAACCTAATAATCGAGCCCGTTCGTTTGTCCAATATCAATGTCAAATTAACTGGCTTTACTGACCCAGATAATTGGATAACT 1227 38.55 MWHNNHRPQITSISLSKQVVYYNSIYEVLVKDLGVNKAKAHASKSLYLIEIGSNDIFAYFASSNLRKIYTPPQYLDLMSHHFEKQLKLLYENGARKLVVIGVGVIGCTPAMRYQNITEGCNSEMNGWAFVFNQHLTSMLKRLKDELFGFHFSYFDGFSIMLSSIHNPTSFGFSEVKAACCGSGRLKAEVACIPKVSYCNNRDKHLFWDKYHPTQQAHHFFSDLIFNGSQRYTFPINVYKSVEKARAHGALVIQKPQKVNQTIFAFVQDHNGYKFKLIQRTSLTDPLVEIMLHVQDLNPSLNFYTKALGMKLFESQNNSTGQIVLGTLGYGINQSKTTVLQLQKRKNIPRDDGRDGYSMVYIGTDNVNKSAEAAKLVMKELGGNLIIEPVRLSNINVKLTGFTDPDNWIT 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7233178 7244925 + Lsi05G005820.1 Lsi05g00582 663074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00582 409 Pfam GDSL-like Lipase/Acylhydrolase 19 224 IPR001087 GO:0016788
Lsi05g00582 409 PANTHER - 10 239 - -
Lsi05g00582 409 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 237 315 IPR029068 -
Lsi05g00582 409 SUPERFAMILY SGNH hydrolase 45 225 - -
Lsi05g00582 409 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 289 407 IPR029068 -
Lsi05g00582 409 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 285 409 IPR037523 -
Lsi05g00582 409 Gene3D - 282 409 IPR029068 -
Lsi05g00582 409 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 10 239 - -
Lsi05g00582 409 Gene3D SGNH hydrolase 4 230 IPR036514 -
Lsi05g00582 409 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 289 326 IPR004360 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00582 - - - csv:101203033 422.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00582 Lsi-Chr5:7233178 Lsi01g00204 Lsi-Chr1:1916431 1.39E-38 dispersed
Lsi05g00581 Lsi-Chr5:7208382 Lsi05g00582 Lsi-Chr5:7233178 1.82E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g532 . . . . Bpe09g00168 . Bma10g00554 Bma13g01066 Cmo16g00933 . . . . . . . . . . . . . . . Cla10g00493 Cam10g0485 Cec10g0503 . Clacu10g0504 Cmu10g1331 Cre10g0734 . . . Cone15ag1171 . Csa03g00499 . Cme06g02863 Blo07g00900 Blo10g00840 Bda05g00715 Bda12g00919 . Bpe03g00788 . . . . . . Cma16g00899 . Car16g00875 . . Bhi11g00599 . . . . Mch10g1293 . . . . . . . . Lsi05g00582 . Chy06g01827 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002311 4 4 2 2 2 2 2 0 1 2 1 2 2 2 2 2 2 2 2 1 2 1 1 3 4 1 4 3 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00582 Lsi_Chr05 FPKM 1.774047 2.263121 1.672247 1.697157 3.578772 3.694677 3.828178 2.972138 2.787558 2.672339