Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00595 ATGGTTGATCTAGACATCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCTGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACAACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTTAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGCTGGGGAAGATAATCCAACTCCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTCGTTCAGGCCGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA 339 46.31 MVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7383441 7383779 - Lsi05G005950.1 Lsi05g00595 663087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00595 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Lsi05g00595 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Lsi05g00595 112 SUPERFAMILY eIF1-like 3 112 IPR036877 GO:0003743|GO:0006413
Lsi05g00595 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Lsi05g00595 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Lsi05g00595 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Lsi05g00595 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Lsi05g00595 112 PANTHER BNAA10G09260D PROTEIN 1 112 - -
Lsi05g00595 112 Gene3D - 2 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01903 Lsi-Chr2:24954852 Lsi05g00595 Lsi-Chr5:7383441 1.54E-75 dispersed
Lsi05g00595 Lsi-Chr5:7383441 Lsi11g01466 Lsi-Chr11:23229451 3.68E-62 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00595 K03113 - csv:101214921 228.794