Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g00596 | ATGACTCACTTTCTCGAACCCAAATTCCACCAAACCTCATTTACCCCTCTCCGCCGCATCCCCAAATCTCCACCGCCCATTTCTATCCGATGCGGCGGTGCCACCCGCGAGCTCCGATCCCGACTAGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAGCTCATCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTCTAAACCCTAGACCCGTCAGAAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGTGGGGGTTTCAACGCTTCGGTAATAAAAAAGGCCGAGACCCGATTGGCCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAACTCGCATTTCCGCCGCCGGTCCGATGTTGAAGTCGATCGGTTCATAACCGGCTGCGGCGGCGTTTCAGTACCCACAGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCGGAGCCTGTGATTGAGGCATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGGGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAAAAGGGGGAAATTAGGGGAAATATCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAGGTAGCGGCGAGGATGAATGCCATGAGTAATGCTTCTGAGAACGCAATGGAGTTGAAGAAATCTGTTTCGATTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATTGTTGCTGGAACTGAAGCTCTCGAGGGATTTTGA | 1053 | 50.81 | MTHFLEPKFHQTSFTPLRRIPKSPPPISIRCGGATRELRSRLDSIKNTQKLTEAMKLIAAAKVRRAQEAVINSRPFSQSLAQFLHFITQQIQRDDIDFPFLNPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLAELKNLDLGHTLISVGKKGNSHFRRRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSEPVIEALLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGKLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMSNASENAMELKKSVSIAYNRERQAKITGEILEIVAGTEALEGF | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7388893 | 7389945 | - | Lsi05G005960.1 | Lsi05g00596 | 663088 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g00596 | 350 | Hamap | ATP synthase gamma chain [atpG]. | 32 | 347 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | CDD | F1-ATPase_gamma | 35 | 343 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 245 | 347 | - | - | |
Lsi05g00596 | 350 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 33 | 99 | - | - | |
Lsi05g00596 | 350 | PRINTS | ATP synthase gamma subunit signature | 325 | 346 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | PRINTS | ATP synthase gamma subunit signature | 294 | 313 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | PRINTS | ATP synthase gamma subunit signature | 106 | 125 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | PRINTS | ATP synthase gamma subunit signature | 202 | 219 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | Gene3D | - | 100 | 228 | - | - | |
Lsi05g00596 | 350 | Pfam | ATP synthase | 35 | 347 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | PANTHER | ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE | 8 | 348 | - | - | |
Lsi05g00596 | 350 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 35 | 347 | IPR035968 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 8 | 348 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Lsi05g00596 | 350 | TIGRFAM | ATPsyn_F1gamma: ATP synthase F1, gamma subunit | 35 | 347 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00117 | Lsi-Chr2:957772 | Lsi05g00596 | Lsi-Chr5:7388893 | 3.92E-20 | dispersed | |
Lsi05g00596 | Lsi-Chr5:7388893 | Lsi02g00599 | Lsi-Chr2:5327090 | 2.18E-152 | transposed | |
Lsi05g00596 | Lsi-Chr5:7388893 | Lsi01g00426 | Lsi-Chr1:3608956 | 2.68E-152 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g00596 | K02115 | - | csv:101214682 | 610.912 |