Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00596 ATGACTCACTTTCTCGAACCCAAATTCCACCAAACCTCATTTACCCCTCTCCGCCGCATCCCCAAATCTCCACCGCCCATTTCTATCCGATGCGGCGGTGCCACCCGCGAGCTCCGATCCCGACTAGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAGCTCATCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTCTAAACCCTAGACCCGTCAGAAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGTGGGGGTTTCAACGCTTCGGTAATAAAAAAGGCCGAGACCCGATTGGCCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAACTCGCATTTCCGCCGCCGGTCCGATGTTGAAGTCGATCGGTTCATAACCGGCTGCGGCGGCGTTTCAGTACCCACAGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCGGAGCCTGTGATTGAGGCATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGGGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAAAAGGGGGAAATTAGGGGAAATATCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAGGTAGCGGCGAGGATGAATGCCATGAGTAATGCTTCTGAGAACGCAATGGAGTTGAAGAAATCTGTTTCGATTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATTGTTGCTGGAACTGAAGCTCTCGAGGGATTTTGA 1053 50.81 MTHFLEPKFHQTSFTPLRRIPKSPPPISIRCGGATRELRSRLDSIKNTQKLTEAMKLIAAAKVRRAQEAVINSRPFSQSLAQFLHFITQQIQRDDIDFPFLNPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLAELKNLDLGHTLISVGKKGNSHFRRRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSEPVIEALLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGKLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMSNASENAMELKKSVSIAYNRERQAKITGEILEIVAGTEALEGF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7388893 7389945 - Lsi05G005960.1 Lsi05g00596 663088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00596 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 CDD F1-ATPase_gamma 35 343 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 245 347 - -
Lsi05g00596 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 99 - -
Lsi05g00596 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 Gene3D - 100 228 - -
Lsi05g00596 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 8 348 - -
Lsi05g00596 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 PANTHER ATP SYNTHASE GAMMA CHAIN 8 348 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi05g00596 350 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 35 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00117 Lsi-Chr2:957772 Lsi05g00596 Lsi-Chr5:7388893 3.92E-20 dispersed
Lsi05g00596 Lsi-Chr5:7388893 Lsi02g00599 Lsi-Chr2:5327090 2.18E-152 transposed
Lsi05g00596 Lsi-Chr5:7388893 Lsi01g00426 Lsi-Chr1:3608956 2.68E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00596 K02115 - csv:101214682 610.912