Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00604 ATGGGTTGCCGAAACCGGGACCTTTCAGAAGATGAAACTTGCTCTTCCACGCTCAGCGAGGCCCTGCTCTTCGCTACCATGTGCCTAATTGGACTTCCCGTTGAAGTTCACATCAAAGATGGCTCCGTCTATTCCGGCATCTTTCACACTGCCTGTGTCGAGAATGAATATGGTGTTGTTCTGAAGAAAGCACGGATGACAAAAAAGGGTAAAAGGAATGTAAATGTGGACGATGGCGTTGTAATTGATACTCTTATTGTTCTTTCTGGTGATCTTGTCCAAGTTGTTGCGACGGTCATATTGGGTTATTTCAAATGTACAGGAGGTTATACTTCCGGCTGTGACCTGGTCCAAGATCAAAACGGGTTTGTTCGTGGTTCACTGCCTACCGTAACAGGGAAGCTTAGTGATGTTAGACAAGTTTTGCGAGATAATGTTGAGAACAACCAGGGAGATGGACATCAGAAAAGGGAAAGGATAAATTGCAAAAAGCTTGAAGATGTCTCTGATGCTGCAATCAATTGGAGACAGGACCCAGATAACCAATTGAAAAAGGAGCAGGATGATCATGGTCAGGAATTTGACTTGCATAAAGGAATCAATGTCGATCGAGTTCAATCCTCTTTATCGAGTGAGAAACCATGCACTGAAAGGCCTGTCTCAGCCAACACTACTACGAATGCATTTTCAGTTGGTGTCTCAACTTCTTCACTTTCATCTGTGGATAGAAGCATGGACTCCTGTCATAGTTCTATGCCATTAACTACTGACATTGCTCCTTCTCATAAGGAATTCAAGCTTAATCCCGGAGCCAAACTCTTCTCTCCATCAGTTGCAAATAGCATGTCAGCAACTCCTGCAGCTCCAGTGGCTGCAAACGTGGCTTATATTCCGAACAACTCACCAGTACTACCTGTGCCTGTTGCTCAACCAGAGGTGGAGTTCAGTCCTTTTGTACCTCGTTCACCTGTGCCTGCCGCCAAGTTTGTCCCATATGGAAACTCAATAGCTGGGTTTGGTGGCAACGTTGCACAATTTTCCCAACCTGTACGTATTGTTTCAGCAGTAGGATCCTCTTTACTGGTAACTGGTGATAGCATTATGAAAATTTCAGTGCAACCGGTAGTAATAAACTTCATTCCTGCCAATTTGCTGACCGGAGTTCTCCACCTTATTTCATCTTTCCTACAGATGGTGGGACATGTGGGAACCAGGACGCAGCCACTCAGATATGTTGGTCAGTATCCTCTCCAGGCTGGCCCAACCTTTGGGCCCCCAAATTCTCCAGCAGACTTGGCTCACGGTACAGCAGTTGTCTCACCGGTACCACCTTGCCCTTTGTTGACAGCACAGCCTGCTCAATATCCGAAACATCAAGGAACTGCAGCAACACAAGCATTGCAGTTTTGTGTTCCTCCGCCATTTATGGCCGGTGGCCACCAACCGCTTGCCGCAGTGCCAAGCCACCTTCCAATTTTGCAGCCCTCCTTCCCACTCAATCGCCCAATGCAAGTGCCAGGAACTAATGCATTCTTCAACACCAAGTTCTAA 1551 46.55 MGCRNRDLSEDETCSSTLSEALLFATMCLIGLPVEVHIKDGSVYSGIFHTACVENEYGVVLKKARMTKKGKRNVNVDDGVVIDTLIVLSGDLVQVVATVILGYFKCTGGYTSGCDLVQDQNGFVRGSLPTVTGKLSDVRQVLRDNVENNQGDGHQKRERINCKKLEDVSDAAINWRQDPDNQLKKEQDDHGQEFDLHKGINVDRVQSSLSSEKPCTERPVSANTTTNAFSVGVSTSSLSSVDRSMDSCHSSMPLTTDIAPSHKEFKLNPGAKLFSPSVANSMSATPAAPVAANVAYIPNNSPVLPVPVAQPEVEFSPFVPRSPVPAAKFVPYGNSIAGFGGNVAQFSQPVRIVSAVGSSLLVTGDSIMKISVQPVVINFIPANLLTGVLHLISSFLQMVGHVGTRTQPLRYVGQYPLQAGPTFGPPNSPADLAHGTAVVSPVPPCPLLTAQPAQYPKHQGTAATQALQFCVPPPFMAGGHQPLAAVPSHLPILQPSFPLNRPMQVPGTNAFFNTKF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7496434 7505920 - Lsi05G006040.1 Lsi05g00604 663096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00604 516 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 378 513 - -
Lsi05g00604 516 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 1 350 - -
Lsi05g00604 516 PANTHER ATAXIN 2-RELATED 378 513 IPR045117 GO:0003723
Lsi05g00604 516 Pfam Ataxin 2 SM domain 20 97 IPR025852 -
Lsi05g00604 516 PANTHER ATAXIN 2-RELATED 1 350 IPR045117 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00604 - - - csv:101213714 764.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00604 Lsi-Chr5:7496434 Lsi07g00608 Lsi-Chr7:6529167 8.68E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g504 . . . . Bpe09g00179 . . . . . . . . . . . . . . . . . . . Cla10g00511 Cam10g0506 Cec10g0523 Cco10g0510 Clacu10g0527 Cmu10g1353 Cre10g0757 . . . Cone15ag1159 . Csa03g00519 . Cme06g02258 . Blo10g00827 . Bda12g00905 . . . . Sed13g1180 . . Cma04g00947 Cma16g00862 . . . . Bhi11g00628 Tan01g1699 Cmetu06g0121 . . Mch10g1264 . . . . . . . . Lsi05g00604 . Chy06g01811 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010644 1 1 1 0 1 1 2 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00604 Lsi_Chr05 FPKM 12.383534 15.007856 19.577431 18.509228 21.129459 16.798569 20.835817 30.449905 30.096916 31.970457