Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00605 ATGGTGATCATGGACATAAATCTAGGACCGATCAATACTTCTGTCTTAACTGATCAGCAAAACCACCGATCAGAGCTCATTTGGCATGATCGAAATACGGGTGAGTTGCATTGTAGACGACGGGAGGCAATTGTTAGATGCAACATCCCATTACACCCGCTTATAGTTCCAAACGCTTCCCGCAGACCTTACCGGCCTGCCGCCACTCGCCGGCGCGCCCCCACCGCCACTTTTCTTTCTTCTATCCTCATTTCTCTTTCTGCTGCAATTTCACTCCAACCCCCAGTTTTTTTCACAATGAAGCAGAAATTTAAATCCAAGAAGTCTGGCAAGCAGAAGCGACTATCTGAAATTGAAGAAATTAAGCTCTTGAATTCATGGATTGAATCACAGAAACCTGACTCAGGCTCCAATCCTATGTCGCTCCCTCCGCCGCCCGAGAATACCCCCGTTGGCCGCATCGACGCCAATACCTACTCTCGTTACGCCGGAGCGACGAGGTTTGATCAGTTGCCGATTTCGAACAAGACCAAAGATGGGTTGCGCAAAGCTGAGTTCGTTGACATGACTGACATACAGAAGGCTTCACTGCCTCACGCGCTTTGTGGTCGAGATATTCTTGGTGCAGCTAAAACTGGTTCAGGAAAGACGCTAGCTTTTCTCATACCTGTTCTGGAAAAATTGTATAGAGAGAGATGGGGTCCTGAGTTTGGAGTAGGGAGTATAATAATATCTCCTACAAGAGAATTAGGAGCTCAGCTGTTTGATGTATTGAAAGCTGTAGGGAAGTTTCATAATTTCAGTGCTGGCCTGTTAATTGGTGGTCGTAAAGATGTTAACACTGAGAAGGAGCACGTGAATGAGTTGAACATTCTTGTTTGCACTCCTGGTCGACTCCTTCAGCATATGGATGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCAGATCGTATTCTCGATGTTGGATTTAAGAAGACTTTAAATGCTATCGTCTCACAGCTACCTAAGTGTAGACAAACCTTTCTGTTCTCAGCAACTCAAACGAAGTCTGTTCAGGATCTTGCGAGACTCAGTTTGAAAGATCCTGAGTACCTTAGTGTTCATGAAGAATCTGTGACTGCCACACCCAATAGTCTACAGCAAACTGCTATGGTTGTTCCTCTTGAGCAGAAGCTGGACATGCTATGGAGCTTTATAAAGGCGCATCTTAATTCTAAGATTCTTGTGTTTCTCTCTAGCTGTAAGCAGTTGCGCCCTGGAATCCCATTGAAGTGCCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGGATATATTCCGAGTTCTGTGAGAAGCGTTCAGTTCTCTTCTCAACAGATGTAGCCTCCAGAGGTCTTGATTTTAATAAGGCTGTTGACTGGGTTGTACAGGTTGATTGCCCTGAAGATGTGGCTTCTTACATACATAGAGTTGGTCGCACTGCCCGGTACCATTCAGGTGGGAGATCGGTTTTATTTATCATGCCCTCGGAAATGAAAATGCTGGAACGATTGGAATCAGCCAAAGTACCCATTCAGCTTATCAAGGCAAACACAAAAAGACTTCAACCAGTTTCTGGTTTGCTGTCAGCCTTGTTAGTAAAGTATCCTAATTTTCAGCAACTCGCTCAAAGGGCCTTTATCACATATCTTCGGTCAATTCATATCCAGAAGGATAAGGAAATATTTGATGTTATGAAACTGTCAATTGACGAATTTTCAGCTTCGTTGGGGTTGCCAATGACCCCAAAAATTCGTTTCATTGATCAGAAAAGGAGGTCACAGAAGATGTCTGCTAATCCTACCACTTTTCTTGCATTGGAATCATCAGGTAACAAGAATGCTTTCAATATGTCAGACGGAGAATTGGAGTATGGAGACTTTAAAGAAAGCGACCAAGGACTTCTTCCGCCTATTGATACCCCTTCTATTTTCTTGCTACCTGAAGATTTAGAAACTTTGCTCAGGCCACCTACTCGGATATTGAAGAAAAAGAAGTTAAAGATCAATGTCCACAGGCCAGTAGGGACGAGAGTCAGTTTTGATGATGATGGCAACGCACTTGCCCCTCTAGCTAGGCTAGCTGACATCAATAGTAGCAATGAGACATTTGTAGTCGATAAAGATCAAAAAGAGGAGTTTTACAAAAAGAGGAGGGAAGAGTTGAAACAAGCTGACAAGGAAGACAAACTTCTCAATCGTAATCGTCTTAAAGAGAAGCGGAAGGAGAAGATGAATAAGATGAAGAAGAGGGCCGCCAAAGAGAGTCAGGACGACGATGATGACGTTTCTGGGTCTGAAGAAGACAGACCTCAGAAAAGGTCCAAGAAATTTGTTGACAGTGATAGTGATATTGATAATAAAGTAGAAAACAACTTCAATACAGAGTCCATTTCAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTATTGAGTACTCTGCAACCATAA 2490 43.45 MVIMDINLGPINTSVLTDQQNHRSELIWHDRNTGELHCRRREAIVRCNIPLHPLIVPNASRRPYRPAATRRRAPTATFLSSILISLSAAISLQPPVFFTMKQKFKSKKSGKQKRLSEIEEIKLLNSWIESQKPDSGSNPMSLPPPPENTPVGRIDANTYSRYAGATRFDQLPISNKTKDGLRKAEFVDMTDIQKASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEFGVGSIIISPTRELGAQLFDVLKAVGKFHNFSAGLLIGGRKDVNTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVSQLPKCRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPNSLQQTAMVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQLRPGIPLKCLHGRMKQDKRMGIYSEFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFIMPSEMKMLERLESAKVPIQLIKANTKRLQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKDKEIFDVMKLSIDEFSASLGLPMTPKIRFIDQKRRSQKMSANPTTFLALESSGNKNAFNMSDGELEYGDFKESDQGLLPPIDTPSIFLLPEDLETLLRPPTRILKKKKLKINVHRPVGTRVSFDDDGNALAPLARLADINSSNETFVVDKDQKEEFYKKRREELKQADKEDKLLNRNRLKEKRKEKMNKMKKRAAKESQDDDDDVSGSEEDRPQKRSKKFVDSDSDIDNKVENNFNTESISVAEQEELALKLLSTLQP 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7505723 7519847 + Lsi05G006050.1 Lsi05g00605 663097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00605 829 Pfam Helicase conserved C-terminal domain 398 497 IPR001650 -
Lsi05g00605 829 Gene3D - 384 616 IPR027417 -
Lsi05g00605 829 SMART DUF4217_3 537 600 IPR025313 -
Lsi05g00605 829 MobiDBLite consensus disorder prediction 779 802 - -
Lsi05g00605 829 Coils Coil 721 771 - -
Lsi05g00605 829 Pfam DEAD/DEAH box helicase 190 361 IPR011545 GO:0003676|GO:0005524
Lsi05g00605 829 Gene3D - 153 378 IPR027417 -
Lsi05g00605 829 CDD SF2_C_DEAD 386 507 - -
Lsi05g00605 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 374 IPR027417 -
Lsi05g00605 829 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 536 IPR001650 -
Lsi05g00605 829 SMART ultradead3 185 389 IPR014001 -
Lsi05g00605 829 CDD DEADc_DDX10 177 375 - -
Lsi05g00605 829 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Lsi05g00605 829 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 157 615 - -
Lsi05g00605 829 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 372 IPR014001 -
Lsi05g00605 829 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 166 194 IPR014014 GO:0003724
Lsi05g00605 829 PANTHER RNA HELICASE 157 615 - -
Lsi05g00605 829 SMART helicmild6 412 498 IPR001650 -
Lsi05g00605 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 514 IPR027417 -
Lsi05g00605 829 MobiDBLite consensus disorder prediction 739 812 - -
Lsi05g00605 829 Pfam Domain of unknown function (DUF4217) 542 598 IPR025313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00605 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - csv:101213480 1264.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00605 Lsi-Chr5:7505723 Lsi02g02022 Lsi-Chr2:26238338 4.80E-61 dispersed
Lsi02g00248 Lsi-Chr2:2104891 Lsi05g00605 Lsi-Chr5:7505723 2.34E-94 transposed
Lsi03g01195 Lsi-Chr3:22370855 Lsi05g00605 Lsi-Chr5:7505723 1.41E-71 transposed
Lsi09g00286 Lsi-Chr9:2985071 Lsi05g00605 Lsi-Chr5:7505723 2.81E-31 transposed
Lsi09g01147 Lsi-Chr9:18400742 Lsi05g00605 Lsi-Chr5:7505723 1.79E-93 transposed
Lsi11g00145 Lsi-Chr11:1602306 Lsi05g00605 Lsi-Chr5:7505723 5.58E-41 transposed
Lsi02g01929 Lsi-Chr2:25221691 Lsi05g00605 Lsi-Chr5:7505723 4.80E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00605 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0