Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00608 ATGAGAAGGAGACCTGGCATTGGAGGCTTACAGACAGCTGCAGCGGCGAGGGACCAATACCGCCAGCTGGGTGAAAATGTAGCGAAGCTCAGAACCGATATGATGAAGGAGCAGCTCTCTACCTTTCGATCTCAGTTAGAGGATTTTGCTCGCAAACACAAGAAAGATATCAGTAAGAACCCGGCTTTCAGATCACAGTTTCATGAAATGTGTGCTAAAGTTGGAGTAGATCCCTTGGCCTCAAACAAGGGGTTTTGGGCAGAGCTTCTAGGCATTGGTGATTTCTATTACGAGATTGGAGTGCAAATTGTTGACATTTGCTTGTCGACAAGACCACACAATGGAGGTTTGATTAGCTTACAAGAACTGTGTACTTTGCTTCGGCAGAGACGAAAAAGTGATCGTGAAGCTGTTTCTGAGGATGACTGCTTGCGAGCTATAAGTAAACTGAAGATATTGGGAAGTGGTTTTGAAGTAATTACTGTTGGCAAGAAAAAACTTGTTCGGTCTGTTCCGACTGAGTTGAACAAAGATCACAACGAAATTCTTGAGCTTGCGCAGGCCCAAGGCTATGTAACTGTCGATGAGGTAGAGAGACGACTTTCTTGGACGTCTGGTCGTGCAGTTGATGCCCTCGATACTCTCCTGGATGAAGGTCTTGCGATGATTGATGACGGCCACCGTGATGGTAGACGCCGCTATTGGTTTCCTTGTGTTTCTCCTATGTCATCTTCTCTCACTGCTGATGCCTAA 753 46.08 MRRRPGIGGLQTAAAARDQYRQLGENVAKLRTDMMKEQLSTFRSQLEDFARKHKKDISKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYEIGVQIVDICLSTRPHNGGLISLQELCTLLRQRRKSDREAVSEDDCLRAISKLKILGSGFEVITVGKKKLVRSVPTELNKDHNEILELAQAQGYVTVDEVERRLSWTSGRAVDALDTLLDEGLAMIDDGHRDGRRRYWFPCVSPMSSSLTADA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7523449 7527881 - Lsi05G006080.1 Lsi05g00608 663100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00608 250 Coils Coil 13 33 - -
Lsi05g00608 250 PIRSF ESCRT2_Vps22 1 245 IPR016689 GO:0000814|GO:0071985
Lsi05g00608 250 SUPERFAMILY Winged helix DNA-binding domain 175 238 IPR036390 -
Lsi05g00608 250 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 242 IPR016689 GO:0000814|GO:0071985
Lsi05g00608 250 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Lsi05g00608 250 SUPERFAMILY Winged helix DNA-binding domain 24 174 IPR036390 -
Lsi05g00608 250 Gene3D - 91 171 IPR036388 -
Lsi05g00608 250 Gene3D - 24 85 - -
Lsi05g00608 250 Gene3D - 172 250 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00608 K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22 - csv:101213237 494.197
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g489 . . . . . Bpe08g01130 . . . Cmo04g01021 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00523 . Cme06g02261 . . . . . . . . . . . Cma04g00951 . Car04g00889 . . . . . . . . . . . . . . . . . Lsi05g00608 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012198 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00608 Lsi_Chr05 FPKM 5.346109 5.576896 9.08855 8.81816 13.025551 11.860247 11.073678 7.94622 8.583914 7.818967