Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00612 ATGTTGGGGTTTGGTGCTGCGCAACTGCCACCAGAAATTGGGAAGCTCTGGACAGAGAAGCGTGAGAAACGCCTGATTTGGCTCAACAAGCTTTCTGAAAATGGGGGACATCGCCACCCACACCATCCTTCTCAAATTAGCAAATTTGACTCAGTAACGGCCGTAAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAGAGGATTTTGGTTTATGAGTTCATGGCTAAAGGTTCCTTGGAGGATCATCTTCTAGATATAGCATCAGATAAGCCACCTCTGGACTGGAAGACGAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCACGAAACCGCTAATCCTCCCGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGACGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGACAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCGCTTACAGGACAATTGACGACGAAATCAGATGTCTACAGTTTCGGCGTCGTGTTTCTGGAGATTATAACTGGAAGAAGGGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTGCTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTATCCGGTGAAGGCTCTGTATCAAGCTCTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGAGTACTCGACCATTGATCAGCGATGTGGTTACAGCTCTTGAATATTTAGCTGCAGACAAGGATGTCGATACAGACGTAGATGGTGAATCAGATTCGGGATCGGTATCAGGATCGGGATCGGGTTCAGCTTCTCCTGATAGAAGTAGTAACAATGAAGATAAAAATGTTGATGTTGAGGGTGATGGGAGGTGA 1056 44.51 MLGFGAAQLPPEIGKLWTEKREKRLIWLNKLSENGGHRHPHHPSQISKFDSVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEFMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLIAWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEASTRPLISDVVTALEYLAADKDVDTDVDGESDSGSVSGSGSGSASPDRSSNNEDKNVDVEGDGR 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7554669 7560612 + Lsi05G006120.1 Lsi05g00612 663104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00612 351 Gene3D Phosphorylase Kinase; domain 1 44 104 - -
Lsi05g00612 351 ProSiteProfiles Protein kinase domain profile. 1 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00612 351 PANTHER OS07G0668900 PROTEIN 51 332 - -
Lsi05g00612 351 Pfam Protein kinase domain 52 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00612 351 CDD STKc_IRAK 50 302 - -
Lsi05g00612 351 MobiDBLite consensus disorder prediction 317 337 - -
Lsi05g00612 351 SUPERFAMILY Protein kinase-like (PK-like) 52 309 IPR011009 -
Lsi05g00612 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lsi05g00612 351 Gene3D Transferase(Phosphotransferase) domain 1 105 322 - -
Lsi05g00612 351 PANTHER OS07G0668900 PROTEIN 51 332 - -
Lsi05g00612 351 MobiDBLite consensus disorder prediction 309 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01913 Lsi-Chr2:25045516 Lsi05g00612 Lsi-Chr5:7554669 3.17E-124 dispersed
Lsi05g00612 Lsi-Chr5:7554669 Lsi09g01752 Lsi-Chr9:26197883 3.87E-157 dispersed
Lsi05g00612 Lsi-Chr5:7554669 Lsi04g00826 Lsi-Chr4:7949316 7.71E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83634 PF00069 Pkinase 2.30E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00612 - - csv:101212756 535.028