Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g00616 | ATGTCTTCACTTTCTTCAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAACTCTGTTAGTGGAATGAACTACTACGCCTGTTTGTCTATATTGTCCCTTTTGATTCTTACCCCGTTTGCAATTGCTGTCGAAGGACCGCAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTCAGATTGGACCTAATTTTGTTTGGTGGTTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCCTACATGTCGCTCGACGAAATTTCTCCCTTGACATTCAGCATTGGCAACACCATGAAACGTATATCGGTCATAGTTTCTGCAATAATCATCTTCCGCACACCTGTCCAACCCGTCAACGCTCTCGGAGCTGCGATTGCTGTTCTCGGAACCTTCTTATATTCACAGCACCACCAGCCACCGCTTACCTCAGTCGACGCTGTCGCCGCCGTTTCGCCTTCCGTAACTGCCGGGAGCTTCCGCCCAGACGTTTGCGCCGTCGTCCGCCGTGGGTAG | 564 | 48.76 | MSSLSSGFMGAMISNLAFVFRNIFSKKGMKGNSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSQIGPNFVWWLAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQHHQPPLTSVDAVAAVSPSVTAGSFRPDVCAVVRRG | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7589459 | 7593920 | - | Lsi05G006160.1 | Lsi05g00616 | 663108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g00616 | 187 | PANTHER | BNAA02G09420D PROTEIN | 6 | 166 | - | - | |
Lsi05g00616 | 187 | Pfam | Triose-phosphate Transporter family | 6 | 151 | IPR004853 | - | |
Lsi05g00616 | 187 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 54 | 153 | - | - | |
Lsi05g00616 | 187 | PANTHER | SOLUTE CARRIER FAMILY 35 | 6 | 166 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01225 | Lsi05g00616 | CCT | |
Lsi04g01225 | Lsi05g00616 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00616 | Lsi-Chr5:7589459 | Lsi01g00289 | Lsi-Chr1:2560564 | 9.81E-12 | dispersed | |
Lsi05g00616 | Lsi-Chr5:7589459 | Lsi05g00617 | Lsi-Chr5:7593979 | 2.03E-102 | tandem | |
Lsi04g01225 | Lsi-Chr4:18936200 | Lsi05g00616 | Lsi-Chr5:7589459 | 1.22E-81 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g00616 | K15283 | - | csv:101216838 | 289.656 |