Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00616 ATGTCTTCACTTTCTTCAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAACTCTGTTAGTGGAATGAACTACTACGCCTGTTTGTCTATATTGTCCCTTTTGATTCTTACCCCGTTTGCAATTGCTGTCGAAGGACCGCAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTCAGATTGGACCTAATTTTGTTTGGTGGTTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCCTACATGTCGCTCGACGAAATTTCTCCCTTGACATTCAGCATTGGCAACACCATGAAACGTATATCGGTCATAGTTTCTGCAATAATCATCTTCCGCACACCTGTCCAACCCGTCAACGCTCTCGGAGCTGCGATTGCTGTTCTCGGAACCTTCTTATATTCACAGCACCACCAGCCACCGCTTACCTCAGTCGACGCTGTCGCCGCCGTTTCGCCTTCCGTAACTGCCGGGAGCTTCCGCCCAGACGTTTGCGCCGTCGTCCGCCGTGGGTAG 564 48.76 MSSLSSGFMGAMISNLAFVFRNIFSKKGMKGNSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSQIGPNFVWWLAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQHHQPPLTSVDAVAAVSPSVTAGSFRPDVCAVVRRG 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7589459 7593920 - Lsi05G006160.1 Lsi05g00616 663108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00616 187 PANTHER BNAA02G09420D PROTEIN 6 166 - -
Lsi05g00616 187 Pfam Triose-phosphate Transporter family 6 151 IPR004853 -
Lsi05g00616 187 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 153 - -
Lsi05g00616 187 PANTHER SOLUTE CARRIER FAMILY 35 6 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01225 Lsi05g00616 CCT
Lsi04g01225 Lsi05g00616 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00616 Lsi-Chr5:7589459 Lsi01g00289 Lsi-Chr1:2560564 9.81E-12 dispersed
Lsi05g00616 Lsi-Chr5:7589459 Lsi05g00617 Lsi-Chr5:7593979 2.03E-102 tandem
Lsi04g01225 Lsi-Chr4:18936200 Lsi05g00616 Lsi-Chr5:7589459 1.22E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00616 K15283 - csv:101216838 289.656