Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00617 ATGATCTCTTCTTTCACTCAATCTGCAAAACCCATTAATGGGTCCGACGTGGTTCTCCGGCGGAGGTCTCCGGCGCCAATCCGGCGGTTTTCATGTGCACCTCCATTGCCGGGGAAAAAACCCCAAAGCTCTGTTGTGTGTATGAAAAATGCTCTCCATATCTCATCGGTTTCCAATTTCGGGCCATTGGGAACTCGGAAGAGTGATTTGATTACGTGCAAAGCCTATGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAAATGACGGTGGCCGAAGCGCCGTCCGAGGCGGCGAAGAAGGTGAAGATCGGCCTGTATTTTGCTCTCTGGTGGAGTTTGAACGTTGTGTTCAACATTTACAACAAGAAGGTTTTGAATGCTTATCCATATCCATGGCTAACCTCCACACTTTCTCTTGCTGTTGGTTCTCTCATCATGTTAGTCTCTTGGATGACGAGGATCGCCGAGGCTCCCAAGACTGATTTCGAGTTCTGGAAATCCTTGTTCCCTGTTGCTGTGGCCCATACAATTGGCCATGTAGCGGCAACAGTGAGCATGTCAAAGGTTGCTGTCTCATTCACTCATATCATCAAGAGTGGTGAGCCTGCATTTAGCGTATTGGTTTCAAGGTTCCTGTTGGGTGAGACTTTTCCTGTTCCTGTCTACCTCTCTCTTCTTCCGATCATCGGTGGCTGTGGGCTTGCTGCTGTGACCGAGCTCAACTTCAATATGATAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAACTCTGTTAGTGGAATGAACTACTACGCCTGTTTGTCTATATTGTCCCTTTTGATTCTTACCCCGTTTGCAATTGCTGTCGAAGGACCGCAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTCAGATTGGACCTAATTTTGTTTGGTGGTTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCCTACATGTCGCTCGACGAAATTTCTCCCTTGACATTCAGCATTGGCAACACCATGAAACGTATATCGGTCATAGTTTCTGCAATAATCATCTTCCGCACACCTGTCCAACCCGTCAACGCTCTCGGAGCTGCGATTGCTGTTCTCGGAACCTTCTTATATTCACAGGCAAAACAATAA 1191 47.19 MISSFTQSAKPINGSDVVLRRRSPAPIRRFSCAPPLPGKKPQSSVVCMKNALHISSVSNFGPLGTRKSDLITCKAYEADRSQPIESNIEMTVAEAPSEAAKKVKIGLYFALWWSLNVVFNIYNKKVLNAYPYPWLTSTLSLAVGSLIMLVSWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCGLAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGNSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSQIGPNFVWWLAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7593979 7598065 - Lsi05G006170.1 Lsi05g00617 663109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00617 396 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 27 396 - -
Lsi05g00617 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016021|GO:0022857|GO:0055085
Lsi05g00617 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 238 - -
Lsi05g00617 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Lsi05g00617 396 PANTHER SOLUTE CARRIER FAMILY 35 27 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00413 Lsi-Chr1:3525649 Lsi05g00617 Lsi-Chr5:7593979 9.23E-180 dispersed
Lsi04g00366 Lsi-Chr4:3660619 Lsi05g00617 Lsi-Chr5:7593979 1.36E-48 dispersed
Lsi04g01225 Lsi-Chr4:18936200 Lsi05g00617 Lsi-Chr5:7593979 0 dispersed
Lsi05g00617 Lsi-Chr5:7593979 Lsi04g02388 Lsi-Chr4:31014983 3.30E-22 dispersed
Lsi05g00616 Lsi-Chr5:7589459 Lsi05g00617 Lsi-Chr5:7593979 2.03E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00617 K15283 - csv:101216838 744.191