Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00621 ATGGCGGTAAAACCAGAGGCAGAAAATAAACCTGACTCTGTCTCCTTCTTCTTCCTCCTCCTCTCTTTTATAACAATCTTCCCCTTTTCTCATTTCCGGTTTTCCCCAAAGCCCCATCCATTTCCCCCCCTCCTCCGCCGCGTCTTCGCGCGGCGCCGCTTCCTTCACCTTCCTTCTTCAACTGCACAAACTCACAATCCAACCAACAAACCCATTTCACTTTCTTCTTCTATTCCCTCCCAAAAAACAAAAAACAAAAAAAAAAACTCAATACCCATTTCTAATTTCTCTCTGCTTTTCATCCTTAATCTTTCCGGCATGCAATTTCCAATACGAGATTTGATCTCTGTTTCTTTCCTTATTTCCCTTCTTGTTTTTTCCAATTCTTCTTTCTGTTCTGCACAAGACTATATAATTGGCGGTGGCGGCGGCGGCGGCGACGACGACGATGACGCGAAGCCAGCGGCGCCACCGCCGGAGCAGAACGACTGCAATGGGATATTCTTGTCCTATACATTTATTTCGCGTGAGAAGGAGCTGCCACGGCTGAAGAACGCGACGGCTCAGTCATGGGCATTCAAGTCGGAGGCGGTGATTCTGAATGCGGGATCGACGGAGCTGAAGGCGTGGAAGATGTTCATTGGATTTCACCACCGGGAGATCCTGGTGTCGGCGGCCGGCGCGGTGGTGATTGATGGGTCGGATTTTCCTGTGGACGTTGGGAACGGGACCACTTTGGCTGGGTATCCAATGACGGATCTGAAAACGTCTATTGAAACCGCCGGAGATATTAATCAGATTCAGGCGACGGTGGAGCTGACCGGAACGCAGTTCGGAATTAAGCCGCCTGGTGTTCCGATGCCGAAGACCATTCGCCTTGTTAACGATGGATTTAAGTGCCCTGCGCCTCGCCATCGCGGCAAGAGATCAATGCATGTATGCTGCAAAAAGGATCCAAAGTTCAAGGTGAAAGCAGCAAAGAAAACCAGATTTTTCCCTCGCCAAAATGGAGATCTCTCACTCACTTATGATGTGTTGCAAGCTTATGGAAATAACTATCTTGCTCAAGTCACAATCGACAACAACAATCCTCTTGGCCGTCTTGATCACTGGAACTTAACTTGGGAATGGATGAGAGGAGAGTTCATTCAAAGCATGAGAGGAGCTTATACTCATACAAGAGATTTATCTGAATGCATTTATGGTCCTGCAGGCCAATACTATCAAGAATTCGACTTCTCTCAAGTCATGAGTTGCGATAAGAGGCCGGTCATTGCAGATCTTCCAGCCGATCGAATCAACGACGATAAGGTTGGGAAGTTGCCGTATTGTTGTAGGAATGGAAGTTTGTTGCCAACATTGATGGATGAGAGCAAAGCAAGGTCGATTTTTCAATTACAAGTCTATAAGCTTCCACCGGATATGAACCGAACGGCTCTTAATCCGCCACAGAAATGGAAGATCGCGGGCATTCTAAACCCGAAATACGTTTGTGCGGCTCCTCGTCGAGTTGAACCGACGGAGTTTCCTGACCCGAGTGGACTTCAGTCAACGAGTACCGCGATTGCAAGTTGGCAAATTGTGTGCAACATTACAAGGCCAAAGGTGAAGCAATCAAAATGCTGTGTTTCATTTTCAGCATATTATAATGACTCTGTAATTCCTTGCAATACTTGTGCTTGTGGATGTGAAGATATTGATACTGATACTTGCAATCCAAATGCACATTCAATGCTGCTCCCTCCAGAAGCACTTTTGGTTCCATTTGATAACAGGACAGCAAAAGCAAGAGCTTGGGCTAAAATTAAGCATTACCCAAATCCAAAGAAGATGCCTTGTCCTGATAACTGTGGAGTTAGTCTCAATTGGCATATTAACTCTGATTATACCAATGGATGGACTGCAAGATTAACACTCTTCAATTGGGAAGATTATCCATTTGAGGATTGGTTTACTGCTATTCAGTTGAACAAGGCCGGTCGTGGTTACGAAAACGTTTATTCCTTCAACGGAACCCGGCTTCCGAACATCAAAAATACAATCTTCCTCCAAGGTTTGCCTGGTTTAACATACTTGATGGGAGAGGTCAATGGCACCAATCCTAAATCTGATCCAAGAGTTCCAGGGAAGCAGCAATCTGTCGTTTCTTTCACCAAGAAGGGTCTGCACGATATCGACATACTAAAAGGCGACGGTTTTCCGATCAAAGTCTATTTCAATGGCGAAGAATGTGCGCTTCCAAAGGAAATTCCCACAGCAAGTTCAGGCCACCGCTCTCGCCACGCTTTCATGCCGCTCATCTTCATCTTAGCCTTTACTTTCGCATTTATAACCGGCCGCTTCCATTGA 2349 46.1 MAVKPEAENKPDSVSFFFLLLSFITIFPFSHFRFSPKPHPFPPLLRRVFARRRFLHLPSSTAQTHNPTNKPISLSSSIPSQKTKNKKKNSIPISNFSLLFILNLSGMQFPIRDLISVSFLISLLVFSNSSFCSAQDYIIGGGGGGGDDDDDAKPAAPPPEQNDCNGIFLSYTFISREKELPRLKNATAQSWAFKSEAVILNAGSTELKAWKMFIGFHHREILVSAAGAVVIDGSDFPVDVGNGTTLAGYPMTDLKTSIETAGDINQIQATVELTGTQFGIKPPGVPMPKTIRLVNDGFKCPAPRHRGKRSMHVCCKKDPKFKVKAAKKTRFFPRQNGDLSLTYDVLQAYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSECIYGPAGQYYQEFDFSQVMSCDKRPVIADLPADRINDDKVGKLPYCCRNGSLLPTLMDESKARSIFQLQVYKLPPDMNRTALNPPQKWKIAGILNPKYVCAAPRRVEPTEFPDPSGLQSTSTAIASWQIVCNITRPKVKQSKCCVSFSAYYNDSVIPCNTCACGCEDIDTDTCNPNAHSMLLPPEALLVPFDNRTAKARAWAKIKHYPNPKKMPCPDNCGVSLNWHINSDYTNGWTARLTLFNWEDYPFEDWFTAIQLNKAGRGYENVYSFNGTRLPNIKNTIFLQGLPGLTYLMGEVNGTNPKSDPRVPGKQQSVVSFTKKGLHDIDILKGDGFPIKVYFNGEECALPKEIPTASSGHRSRHAFMPLIFILAFTFAFITGRFH 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7649343 7653345 - Lsi05G006210.1 Lsi05g00621 663113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00621 782 Pfam COBRA-like protein 353 532 IPR006918 GO:0010215|GO:0031225
Lsi05g00621 782 MobiDBLite consensus disorder prediction 143 162 - -
Lsi05g00621 782 PANTHER COBRA-LIKE PROTEIN 7 116 781 - -
Lsi05g00621 782 MobiDBLite consensus disorder prediction 60 88 - -
Lsi05g00621 782 PANTHER COBRA-LIKE PROTEIN 10 116 781 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01234 Lsi05g00621 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00621 Lsi-Chr5:7649343 Lsi06g01401 Lsi-Chr6:24569403 3.26E-30 dispersed
Lsi05g01571 Lsi-Chr5:23465913 Lsi05g00621 Lsi-Chr5:7649343 0 transposed
Lsi04g01234 Lsi-Chr4:19156171 Lsi05g00621 Lsi-Chr5:7649343 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00621 - - csv:101216608 1247.26