Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00630 ATGCATTACACCACTATTCCCTGTGAACTTTTATTGAATTGTGCTTTAAGGGTGGCAGAGTTCTCAGCAGTAGCAAATGAAGCAGAGAAGAGGACTAAGATTCCGTTGAGGTCTGGGATGGAGAGGCCATTTCCAGCCTTCACCTTCACCTTCTTGTTGCTATTCTTAGAAGCCATGGTCAAAACTGAATCAAGTTGTGCATCTAGCTCCAAAGCCTGTAGAGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGCGCTATTCTGGAGCCAGGTAGACCGCCGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGGATGGTCACCCAGTTACGTGGTGAAGCTCAGATGTTGAAGGACTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAAGCTGAAAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAGCAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCAGGAGTTGCTATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCGCAAGATCACGTACTCCGACCTCCAGTTGCTTAA 678 47.2 MHYTTIPCELLLNCALRVAEFSAVANEAEKRTKIPLRSGMERPFPAFTFTFLLLFLEAMVKTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7771313 7773408 + Lsi05G006300.1 Lsi05g00630 663122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00630 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 117 IPR011598 GO:0046983
Lsi05g00630 225 Coils Coil 121 169 - -
Lsi05g00630 225 Gene3D - 69 146 IPR036638 GO:0046983
Lsi05g00630 225 SMART finulus 72 123 IPR011598 GO:0046983
Lsi05g00630 225 PANTHER TRANSCRIPTION FACTOR ILR3 60 225 - -
Lsi05g00630 225 CDD bHLH_AtILR3_like 74 146 - -
Lsi05g00630 225 PANTHER BHLH TRANSCRIPTION FACTOR 60 225 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lsi05g00630 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 141 IPR036638 GO:0046983
Lsi05g00630 225 Pfam Helix-loop-helix DNA-binding domain 70 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00601 Lsi-Chr1:4802303 Lsi05g00630 Lsi-Chr5:7771313 6.15E-21 dispersed
Lsi04g01245 Lsi-Chr4:19399132 Lsi05g00630 Lsi-Chr5:7771313 2.65E-83 dispersed
Lsi05g00630 Lsi-Chr5:7771313 Lsi10g00160 Lsi-Chr10:2566969 3.57E-80 dispersed
Lsi05g01719 Lsi-Chr5:24648201 Lsi05g00630 Lsi-Chr5:7771313 9.62E-44 transposed
Lsi02g00656 Lsi-Chr2:5857614 Lsi05g00630 Lsi-Chr5:7771313 5.68E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25320 PF00010 HLH 9.50E-10 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00630 - - rcu:8280706 283.878