Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00647 ATGGCGTCACATAACAAAATCTTATTGATCTTTTCCATAACCCTTTTCTCAATTCTTTCAAATGTCTCTAGTAATACCATTAACAAATGGTGCAAAACGACGCCGCATCCTAAAGTTTGCATTTCTTTCATCTCCCCAATCAAACCTCCACCACAAAACCGACCGGAGTTTCGAAAAATCGCCATTCAAACCACTTTGGAAAAAGCCGCCGACGCGCAAAATTACGCAACCCGGTTCGGTCCGACCTGTAAAACCACGCGCCAGAGATCCGCGTGGACCGATTGTTTGAAGCTCTATAACGACGTCGTTTTTCAATTAAACCGCACCCTTCAATGCGTCCTTAGCGATGGAACAATCCACCGCCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGTGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCGAAGATGATTAGTAATTGTTTAGCCATTAATGGGAGATTTTTAAAAGAAGGGGTTCAAAGTGGAAATACAATGGGAATGGAATATGATCAAAATGGGTCGTTTCCGATGTGGGTTTTGGACGGTGATCGGAAATTGCTGCAGTCGTCGGCAAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGACTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCGGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGCTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGTATCCAAGGTCCAGGCTTCATCGCTCGAGACATAAGATTCGTGAACACAGCCGGTCCACGAATGGGTCAAGCGGTGGCACTACGATCGTCATCGGATCTATCAGTGTTCCATCGATGCAGCTTTGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAATTCTACAAACAATGTTACATTTATGGTACAATCGACTTCATTTTTGGGAACGCCGCAGTAGTTTTACAAAATTGCTTGATTTACGTAAGAAGACCTTTAAAGGGTCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCATTTCAGAACAGTGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTCAATACATACTTGGGCCGACCCTGGAAGAAGTATTCACGGACTGTCATTATGAAAAGTTACATTGATGGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAGTAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGGTACAGAGTTAAATGGCCAGGTTTTCATGTTATTAGAAGTCCAAATGTGGCTTCCAAGTTTACTGTCCACAGACTCATCGCCGGCCAGACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCGTATGA 1602 46.94 MASHNKILLIFSITLFSILSNVSSNTINKWCKTTPHPKVCISFISPIKPPPQNRPEFRKIAIQTTLEKAADAQNYATRFGPTCKTTRQRSAWTDCLKLYNDVVFQLNRTLQCVLSDGTIHRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGRFLKEGVQSGNTMGMEYDQNGSFPMWVLDGDRKLLQSSAKVRANLVVAKDGTGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVNTYLGRPWKKYSRTVIMKSYIDGLVSPAGWLAWQSSKFAQATLYYGEYRNIGPRASTRYRVKWPGFHVIRSPNVASKFTVHRLIAGQTWLPATGVPFKLGV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8220509 8223289 + Lsi05G006470.1 Lsi05g00647 663139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00647 533 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Lsi05g00647 533 SUPERFAMILY Pectin lyase-like 217 531 IPR011050 -
Lsi05g00647 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Lsi05g00647 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 178 IPR035513 -
Lsi05g00647 533 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 175 IPR006501 GO:0004857
Lsi05g00647 533 Pfam Plant invertase/pectin methylesterase inhibitor 26 174 IPR006501 GO:0004857
Lsi05g00647 533 CDD PMEI-like_3 30 180 - -
Lsi05g00647 533 PANTHER PECTINESTERASE 7 532 - -
Lsi05g00647 533 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 7 532 - -
Lsi05g00647 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 178 IPR035513 -
Lsi05g00647 533 SMART PMEI_2 22 174 IPR006501 GO:0004857
Lsi05g00647 533 Gene3D - 214 533 IPR012334 -
Lsi05g00647 533 Pfam Pectinesterase 220 518 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00647 Lsi-Chr5:8220509 Lsi05g01321 Lsi-Chr5:20974152 1.37E-80 dispersed
Lsi05g00647 Lsi-Chr5:8220509 Lsi09g00673 Lsi-Chr9:7603919 3.57E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00647 K01051 - csv:101213944 910.983