Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00656 ATGTCTTCTCAAGTTTCAAATTTTCCTGCTTCAATTATGAAGGCCAATGACATTCCTGATACAAAGCGTTCAACCGCAAATTTTCATCCTAGTATTTGGAACGATCATTTTCTTTCATTCACCTTTGATGATGCACTGAAAGTAGACGATGGAACGAGAGAACGAACTAAAAAGTTGAAAGAAGAAATAAGAATGATGTTGGTTGCTTCTGAAGGAAACCCATTGGAGAAAGTAAAGTTGGTTGATTCAATCCAACGACTGGATGAAGATCTTCATACTACTTCTCTTCTATTTCGACTTCTCAGACAACAAGGTTATAGGATTTCATGCGATATATTCTCAAAGTTCATGGAGAAGAATGGAAAATTTAAAGAATCATTGGTTGATGATGAAAGAGGAATTTTGAGCTTATATGAAGCATCACATATGAGGGGACATGGAGAAGAAGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTCAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGTAATGCCATGAAATTGCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGAGAATATTTGGCAATATACCAACAACATCCTTCCCATATTGAGACTTTGCTTACTTTCTCAAAACTAGACTTCAACATATTACAAAAACTTCACCAAAAGGAGCTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGAATGTCTCAACCAACTTTCCATTTGCGAGAGATAGAGTTGTGGAGTGTTACTTTTGGATATTGGGTGTATATTTTGAACCTCATTTCGAGATTGGAAGGAAAATATTAACTAAAGTGATCGCCATGACTTCAATTATGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAAGTTTTCACTTTAGCAATCAAAAGGTCACTTGATGCCTCCTACTTCATTCAAAATGATTTTGTTTTTAAGATGAAAAGACAAGCTGAATCCTATTTCAAAGAAGCTGAATGGCTAAACAAAAAGTATAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGCTACCTCAGCTTATTCACTACTTTCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTTTGAATGCCCCAAAATTCTTGAAGCCTCAACCATCATTTGTAGACTCATGGACGATGTTGTCTCCTACAAGTTTGAGAAACAAAGGGAACATGTTGTTTCCGCCATTGAATGTTACATGGTCAATTATGGCTACTCAGAAAAAGAAACATGTGCGGAATTGGAAAAGCAGGTAGAAGATGCATGGAAGGATATAAATGAATGTTGTCTTCTTCCAACGACGGTTCCACTGCCATTTTTGTTGCGTATATTAAATCTCACTAGAGTTATGGCCCTACTTTATTCTGATGAGGATGGATACACAAATGCTAAGGGTAAGACTAAACTTCTTATCGAGTCTCTACTTGTTGACCCAGTGCATTTTTAA 1515 35.91 MSSQVSNFPASIMKANDIPDTKRSTANFHPSIWNDHFLSFTFDDALKVDDGTRERTKKLKEEIRMMLVASEGNPLEKVKLVDSIQRLDEDLHTTSLLFRLLRQQGYRISCDIFSKFMEKNGKFKESLVDDERGILSLYEASHMRGHGEEVLEEALEFTTKHLKTYIQYSNNPHFAAEVSNAMKLPIRKGVPRIKTREYLAIYQQHPSHIETLLTFSKLDFNILQKLHQKELSEICRWWKDLNVSTNFPFARDRVVECYFWILGVYFEPHFEIGRKILTKVIAMTSIMDDIYDAYGTFEELQVFTLAIKRSLDASYFIQNDFVFKMKRQAESYFKEAEWLNKKYKPKFEEYMEVALATSAYSLLSTISFVCMGDIATKEVFDWLFECPKILEASTIICRLMDDVVSYKFEKQREHVVSAIECYMVNYGYSEKETCAELEKQVEDAWKDINECCLLPTTVPLPFLLRILNLTRVMALLYSDEDGYTNAKGKTKLLIESLLVDPVHF 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8410960 8415720 + Lsi05G006560.1 Lsi05g00656 663148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00656 504 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 324 493 - -
Lsi05g00656 504 Gene3D - 89 207 IPR036965 GO:0010333|GO:0016829
Lsi05g00656 504 PANTHER OS04G0344100 PROTEIN-RELATED 324 493 - -
Lsi05g00656 504 PANTHER OS04G0344100 PROTEIN-RELATED 19 312 - -
Lsi05g00656 504 Pfam Terpene synthase family, metal binding domain 324 447 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lsi05g00656 504 Pfam Terpene synthase family, metal binding domain 213 309 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lsi05g00656 504 Pfam Terpene synthase, N-terminal domain 89 182 IPR001906 GO:0010333|GO:0016829
Lsi05g00656 504 Gene3D - 72 87 IPR036965 GO:0010333|GO:0016829
Lsi05g00656 504 Gene3D Farnesyl Diphosphate Synthase 316 502 IPR008949 -
Lsi05g00656 504 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 19 312 - -
Lsi05g00656 504 Gene3D Farnesyl Diphosphate Synthase 208 309 IPR008949 -
Lsi05g00656 504 Gene3D Farnesyl Diphosphate Synthase 30 71 IPR008949 -
Lsi05g00656 504 CDD Terpene_cyclase_plant_C1 23 501 IPR044814 GO:0010333|GO:0016102
Lsi05g00656 504 SUPERFAMILY Terpenoid synthases 210 503 IPR008949 -
Lsi05g00656 504 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 208 IPR008930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00656 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101211697 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00656 Lsi-Chr5:8410960 Lsi05g00658 Lsi-Chr5:8511256 0 dispersed
Lsi07g01410 Lsi-Chr7:20577641 Lsi05g00656 Lsi-Chr5:8410960 2.55E-24 dispersed
Lsi05g00654 Lsi-Chr5:8367277 Lsi05g00656 Lsi-Chr5:8410960 1.70E-38 proximal
Lsi05g00655 Lsi-Chr5:8378387 Lsi05g00656 Lsi-Chr5:8410960 8.03E-33 tandem
Lsi05g00656 Lsi-Chr5:8410960 Lsi05g00657 Lsi-Chr5:8442605 0 tandem
Lsi05g00869 Lsi-Chr5:14752891 Lsi05g00656 Lsi-Chr5:8410960 2.46E-52 transposed
Lsi05g00875 Lsi-Chr5:14877462 Lsi05g00656 Lsi-Chr5:8410960 5.68E-87 transposed
Lsi05g00938 Lsi-Chr5:16517704 Lsi05g00656 Lsi-Chr5:8410960 4.59E-16 transposed
Lsi07g01310 Lsi-Chr7:19117815 Lsi05g00656 Lsi-Chr5:8410960 8.98E-138 transposed
Lsi02g00667 Lsi-Chr2:5958839 Lsi05g00656 Lsi-Chr5:8410960 2.00E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g404 . . . . . . . Bma13g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00832 . . Cpe14g00714 . . . . . . . . . . . . . . . Lsi05g00656 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00656 Lsi_Chr05 FPKM 1.490057 1.251754 7.42524 7.021698 0.0 0.0 0.606757 0.458804 0.502772 0.0