Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00660 ATGTTATGGGACATAAGTACGATTAATCTACTCCCGGAGTATATGAGAGTTTATTATACAATTTTGCTTGATCTTTTGGAAGAGATTGATAAAGAGACATATAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGCTACCTCAGGTTATGCACTACTTTCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTTTGAGTGCCCCAAAATTCTTCAAGCCTCAACCATTATTTGTAGACTCATGAACGATGTTGTCTCCTACAAGTTTGAGAAACAAAGGGAACATGTTGTTTCCACTGTTGAATGTTACATGGCCAATTATGGCTACTCAGTAGAAGAAACATGTGTTGAATTTGAAAATCAAGTAGAAGATGCATGGAAGAATATAAATGAATGTTGTCTTCTTCCAACGACTATTCCAATGCCATTTTTGTTACGTATATTAAATCTCTCCAGATTTATAGCCTTACTTTATTCTGATGAGGATGGATACACAAATGCTAAGGGTAGGACTAAACTTTTTATCGAGTCTGTACTTGTTGACCCAGTGCATTTTTAA 588 35.03 MLWDISTINLLPEYMRVYYTILLDLLEEIDKETYKPKFEEYMEVALATSGYALLSTISFVCMGDIATKEVFDWLFECPKILQASTIICRLMNDVVSYKFEKQREHVVSTVECYMANYGYSVEETCVEFENQVEDAWKNINECCLLPTTIPMPFLLRILNLSRFIALLYSDEDGYTNAKGRTKLFIESVLVDPVHF 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8555816 8557751 + Lsi05G006600.1 Lsi05g00660 663152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00660 195 PANTHER OS04G0344100 PROTEIN-RELATED 3 31 - -
Lsi05g00660 195 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 32 190 - -
Lsi05g00660 195 Pfam Terpene synthase family, metal binding domain 31 137 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lsi05g00660 195 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 3 31 - -
Lsi05g00660 195 Gene3D Farnesyl Diphosphate Synthase 29 193 IPR008949 -
Lsi05g00660 195 PANTHER OS04G0344100 PROTEIN-RELATED 32 190 - -
Lsi05g00660 195 SUPERFAMILY Terpenoid synthases 3 193 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00660 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101211697 280.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00660 Lsi-Chr5:8555816 Lsi05g00869 Lsi-Chr5:14752891 1.29E-50 dispersed
Lsi05g00660 Lsi-Chr5:8555816 Lsi05g00661 Lsi-Chr5:8594106 5.33E-116 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00660 Lsi_Chr05 FPKM 118.346062 127.86422 22.794088 23.342587 21.812897 17.784185 19.572105 25.866011 27.062286 26.538513