Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00662 ATGAGAAAGGAAATAATGTCTTCTCAACTTTCAAATTTTCGTGCTCCAATTATGAAGGCCAATGAAATTCCTGATATTAAGCGTTCAATCGCAAAATTTCATCCTAGTATTTGGAACGATCATTTCCTTTCATTCACCTTTGATGATGCACTGAAAGTAGACGATGGAACGAGAGAACGAACTGAAAAGTTGAAAGAAGAAATAAGGATGATGTTGGTTGCTTCTAAAGGAAACCCATTGGAGAAACTAAAGTTGGTTGATTCAATCCAACGACTGGGTGTATTTTATCATTTTGAAAATGAGATGGACCAAATCTTACAACATTTATATGTTTCTCATTCCACTTTATTCACTAAAGATAGTGATGAAGATCTTCATACTACTTCTCTTCTATTTCGACTTCTCAGACAACAAGAATCATTGGGTGATGATGAAAGAGGAATTATGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGAAGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTCAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGGAATGCCTTGAAAATGCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGAGAGTATTTGGAAATATACCAACAACATCCTTCCCATAATGAGACTTTGCTTACATTCTCAAAACTAGATTTCAACATATTACAAAAATTTCACCAAAAGGAACTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGGAAGTCCCAACAAACTTTCCTTTTGTAAGAGATAGAATTGTGGAGTGCTACTTTTGGACATTGGGAGCATACTTCGAACCTCATTTCAGTGTTGGAAGGAAAATGTTAACCAAAGTTATTGCAATTTCTTCTATTTTAGATGATATATATGATGCTTATGGAACATTTGAAGAGCTTCAAATAAAAAAGCTAGCTGAATCCTACTTTGAAGAAGCTAAATGGTTAAACAAAAAATATAAACCGAATTTTAAGGAGTACATGGACTTGGCATTAAGTACAACAGGTTATACCATGCTTATAACAGTTTCATTTCTCGGAATGGGTGACATTGTAACGAACGAGTTTGAGCAAGAAAGGGAGCATGTTGCTTCTGCTGTTGAATGTTACATGTTGGAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAGTAGTTGATGCATGGAAAGACACAAATGAAGCATGTCTTCATCCAATCGCTGTTCCAATGCCTATTCTAATGCGTGTAGTGAATTTTTCAAGAGTTATGAACTTGCTTTATTTGGATGAAGATGGATATACAAATGCCAAGAGTGGAACAAAATTTCTCATCAAATCTCTTCTTGTTGACTCCTGCCTTGTTAAATAA 1404 35.19 MRKEIMSSQLSNFRAPIMKANEIPDIKRSIAKFHPSIWNDHFLSFTFDDALKVDDGTRERTEKLKEEIRMMLVASKGNPLEKLKLVDSIQRLGVFYHFENEMDQILQHLYVSHSTLFTKDSDEDLHTTSLLFRLLRQQESLGDDERGIMSLYEASHMRGHGEEVLEEALEFTTKHLKTYIQYSNNPHFAAEVRNALKMPIRKGVPRIKTREYLEIYQQHPSHNETLLTFSKLDFNILQKFHQKELSEICRWWKDLEVPTNFPFVRDRIVECYFWTLGAYFEPHFSVGRKMLTKVIAISSILDDIYDAYGTFEELQIKKLAESYFEEAKWLNKKYKPNFKEYMDLALSTTGYTMLITVSFLGMGDIVTNEFEQEREHVASAVECYMLEYGCSEEEACVELHKQVVDAWKDTNEACLHPIAVPMPILMRVVNFSRVMNLLYLDEDGYTNAKSGTKFLIKSLLVDSCLVK 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8610068 8621748 - Lsi05G006620.1 Lsi05g00662 663154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00662 467 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 368 445 - -
Lsi05g00662 467 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 34 222 IPR008930 -
Lsi05g00662 467 Gene3D - 139 221 IPR036965 GO:0010333|GO:0016829
Lsi05g00662 467 Gene3D Farnesyl Diphosphate Synthase 35 76 IPR008949 -
Lsi05g00662 467 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 24 316 - -
Lsi05g00662 467 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 316 369 - -
Lsi05g00662 467 SUPERFAMILY Terpenoid synthases 222 463 IPR008949 -
Lsi05g00662 467 Gene3D Farnesyl Diphosphate Synthase 317 367 IPR008949 -
Lsi05g00662 467 Gene3D Farnesyl Diphosphate Synthase 368 464 IPR008949 -
Lsi05g00662 467 Pfam Terpene synthase, N-terminal domain 37 138 IPR001906 GO:0010333|GO:0016829
Lsi05g00662 467 Pfam Terpene synthase, N-terminal domain 140 196 IPR001906 GO:0010333|GO:0016829
Lsi05g00662 467 PANTHER OS04G0344100 PROTEIN-RELATED 24 316 - -
Lsi05g00662 467 PANTHER OS04G0344100 PROTEIN-RELATED 316 369 - -
Lsi05g00662 467 PANTHER OS04G0344100 PROTEIN-RELATED 368 445 - -
Lsi05g00662 467 Gene3D - 77 138 IPR036965 GO:0010333|GO:0016829
Lsi05g00662 467 CDD Terpene_cyclase_plant_C1 28 462 IPR044814 GO:0010333|GO:0016102
Lsi05g00662 467 Pfam Terpene synthase family, metal binding domain 227 315 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lsi05g00662 467 Pfam Terpene synthase family, metal binding domain 316 369 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lsi05g00662 467 Gene3D Farnesyl Diphosphate Synthase 222 316 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00662 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101211452 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00662 Lsi-Chr5:8610068 Lsi07g01411 Lsi-Chr7:20610933 1.02E-117 dispersed
Lsi05g00661 Lsi-Chr5:8594106 Lsi05g00662 Lsi-Chr5:8610068 6.27E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00662 Lsi_Chr05 FPKM 52.933334 52.295147 50.410686 53.732128 14.841844 14.895662 13.760257 59.193169 66.425148 59.477764