Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00669 ATGCCAACAGTTTGGTTGTCCTTGAAGAAATCTTTGCACTGTAAATCAGAGCCATCAGAAGTTCATGACCCCAGAATCAGAAAGAATTTGGGAGCAATTTTGACAAGAAAAACAGGGGGAGGAGGAGGAAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAAAGGCATTTGGATAAGCCTCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGTGAGTTTCTCAACCCAATAACCCATGAAGTCATCCTCAGCAACTCAAGATGCGAGCTCAAAATCACTGGTTTTCACGGTGGTTTCCCCCAAGATCTTCCTGCTGCCGATCCTCACGGTGGCGCTAATGGTGCTTCTACCTTTGTTGGTACTCTCACACCGGGCACGCCCGGCCCCGGTGGCCATCCTTCAATGCATTACTTCAATTCTTCCTTGAGGTCCTCGAAAAAATTCCCTTTCGGAGAAGGGTTTGGTACCTCTAATAAATCTGGCGGCGGCGCTGGCGGAGGAGCCCGCGGCGGTGGAGTTAATTCGAGTAATATAATCTCTTTGGAAACAGAGAATAGTAGGAATGGGTCTTCTTCTACAGTTACTTGCCATAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATTGTGGAGATAATTTGCAGGACAAGCTGGTTAAAGTCTGAGAATCAAAGTGGAAGAATAGAAAGAGTCCTAAAAGTTCACAATATGCAACGTACGTTAGCTCGATTCGAGGAGTATCGCGAGACGGTTAAGATCAAAGCCAGCAAGCTCCCAAAGAAGCACCCTCGGTGTCTTGCAGACGGGAACGAGCTCCTACGATTCTACGGCACGACAGTCGCGTGCTCGCTCGGTCTTAATGGCTCCTCCAGCCTATGCATATCGGAGAAATGCTGCGTTTGTAGAATCATCCGCAATGGATTCTCGGCGAAAACAGAGATGAAAGAAGGGATAGGCGTGTTCACAACTTCAACGAGCGCAAGAGCATTCAGCTCGATCGAAGCACCGGGAGGGGACGAAATGATGACGAGGAAGGCGATGATAGTTTGTAGGGTAATTGCAGGGAGAGTTCATAGGCCATTAGAAAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGTTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATATGCAAACCATGA 1317 46.85 MPTVWLSLKKSLHCKSEPSEVHDPRIRKNLGAILTRKTGGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFPQDLPAADPHGGANGASTFVGTLTPGTPGPGGHPSMHYFNSSLRSSKKFPFGEGFGTSNKSGGGAGGGARGGGVNSSNIISLETENSRNGSSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFSSIEAPGGDEMMTRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8814260 8816849 - Lsi05G006690.1 Lsi05g00669 663161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00669 438 ProSitePatterns Zinc finger C2H2 type domain signature. 205 226 IPR013087 -
Lsi05g00669 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 438 - -
Lsi05g00669 438 SUPERFAMILY ADP-ribosylation 228 437 - -
Lsi05g00669 438 MobiDBLite consensus disorder prediction 158 185 - -
Lsi05g00669 438 Gene3D - 228 437 - -
Lsi05g00669 438 PANTHER - 2 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01251 Lsi-Chr4:19487967 Lsi05g00669 Lsi-Chr5:8814260 0 dispersed
Lsi05g00669 Lsi-Chr5:8814260 Lsi09g01047 Lsi-Chr9:15707830 4.98E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25321 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00669 - - csv:101208986 752.666