Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00670 ATGCCTATTTTATGTCAAGCTAATACTCATGGCAGCCCCATTGATATGGATTCTTTCTCTCCATCATTGGTGGCCTTTAACTTTGTCCTTTATCTCTTCAGCTACGTAGCTGCCACTGATTCCTTAACTGCTCAAAACCCATTTCTCAGAGATGGCTTTAGTCTGGTCTCCAGAAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGACCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCCGTTTGGGTTGCGAATAGGAAAACCCCAATTAATGATTCATCTGGTGTACTGGCGATGAACCTTACAACAGGAAATCTTACAGTCAATAGCCATAATTCAACCGCAATTGTTTGGTCCGCCAGGTTACTGAGAAAAGTCCCCAATGGGGTACTTCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAACTACTCCTGGCAAAGTTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAAAAATAGCATAGATAGAAGATTAGACGCTTGGAAGAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGTCTGTCATGTGGAAAGGTTCCCAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCACTAGTAGACCACTAGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAGGATGAAGTTTACTACCAATACTCCGTTGTTAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAATTACCTGCGCATAATGTACTTATGGTCTGCAGCTGAGAGACAGTGGAGACTTTACACTTCATTACCAAGAGATTTCTGTGACAACTATGCCCTGTGTGGTCCTTATGGATATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACTGCAGGGGAATTTGCGGACGGTTGTGAACGAAACAAACTGATGAATTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAACGCACTTGGGTCAACAAAAGCATGAATCTTGAAGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAGGATTTATATGTCAGAATGCTAGCATCAGAATTAGTCAAGCGTAATGAGGCACACAAAACTGAAAGGTTGAATCCTAAGGTGAAGATTTCATTGGTCGTGATTGTTACCAGTTTAGGTCTGGCTGTCCTATTCATATGCTTATACATTTTCAAAAAGAGATCAACTGTAAAAGATGACCAGAAGAAAATAGAAGCAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCAACAAATAACTTCTCACTTGATAATAAGTTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCTGTGAAGAGACTTTCACGGAGTTCTGGACAGGGAATAAACGAGTTTAAGAACGAAGTAATTCTGATTGCAAAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACACAACGCCAATTATTAGACTGGTCACAACGATACCACATTATTTGTGGAATTGCTAGAGGACTCATGTATCTGCACCAAGATTCTCGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTTGGTTTGGCTAAAACTTGCGGTGGAGATCAAACTGAAGGACGAACGATAAAAGTGGTCGGAACTTACGGATATATGGCACCTGAATATGCTTTTGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAGAGAAGTAGAAGTTTCTGCCACTTGAATGACCAAAATCTTATTGCATATGCCTGGCGATTATGGAAAGAAAGAAATCCAGAAGAATTGATCGACAACGCCATTCGAGAAACGTGTATCATTTCAGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCAAAACAACCCGGATTTTTCGTAGAAAATGAAGCCATTGCAATGAAAAGTGGCTCAAGTAAAGACAAATCAACTTCAACTAATGAATTAACTATTACACTCCCAGATCCAAGGTAA 2496 40.42 MPILCQANTHGSPIDMDSFSPSLVAFNFVLYLFSYVAATDSLTAQNPFLRDGFSLVSRNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLAMNLTTGNLTVNSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRDREDENPQNYSWQSFDYPTDTLLPGMKLGWDLKNSIDRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGVRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYLRIMYLWSAAERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKRTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVRMLASELVKRNEAHKTERLNPKVKISLVVIVTSLGLAVLFICLYIFKKRSTVKDDQKKIEADLELPLFDLSLINSATNNFSLDNKLGEGGFGPVYKGKLTNGQDVAVKRLSRSSGQGINEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGRTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNLIAYAWRLWKERNPEELIDNAIRETCIISEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEAIAMKSGSSKDKSTSTNELTITLPDPR 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8832092 8836420 - Lsi05G006700.1 Lsi05g00670 663162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00670 831 Gene3D Phosphorylase Kinase; domain 1 488 590 - -
Lsi05g00670 831 CDD STKc_IRAK 521 785 - -
Lsi05g00670 831 SMART ntp_6 358 437 IPR003609 -
Lsi05g00670 831 Pfam PAN-like domain 358 423 IPR003609 -
Lsi05g00670 831 MobiDBLite consensus disorder prediction 810 831 - -
Lsi05g00670 831 ProSiteProfiles Protein kinase domain profile. 515 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00670 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Lsi05g00670 831 ProSiteProfiles PAN/Apple domain profile. 357 438 IPR003609 -
Lsi05g00670 831 Gene3D Transferase(Phosphotransferase) domain 1 591 792 - -
Lsi05g00670 831 Gene3D - 34 166 IPR036426 -
Lsi05g00670 831 PIRSF SRK 14 831 IPR024171 GO:0004674
Lsi05g00670 831 Pfam Protein tyrosine and serine/threonine kinase 516 784 IPR001245 GO:0004672|GO:0006468
Lsi05g00670 831 ProSiteProfiles Bulb-type lectin domain profile. 40 163 IPR001480 -
Lsi05g00670 831 CDD B_lectin 49 169 IPR001480 -
Lsi05g00670 831 Pfam D-mannose binding lectin 88 195 IPR001480 -
Lsi05g00670 831 SMART serkin_6 515 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00670 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 200 IPR036426 -
Lsi05g00670 831 CDD PAN_AP_plant 355 436 - -
Lsi05g00670 831 Pfam S-locus glycoprotein domain 227 335 IPR000858 GO:0048544
Lsi05g00670 831 SUPERFAMILY Protein kinase-like (PK-like) 500 794 IPR011009 -
Lsi05g00670 831 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 39 828 - -
Lsi05g00670 831 PANTHER - 39 828 - -
Lsi05g00670 831 SMART blect_4 46 169 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00676 Lsi-Chr2:6059594 Lsi05g00670 Lsi-Chr5:8832092 0 dispersed
Lsi02g00681 Lsi-Chr2:6103145 Lsi05g00670 Lsi-Chr5:8832092 0 dispersed
Lsi02g00691 Lsi-Chr2:6176968 Lsi05g00670 Lsi-Chr5:8832092 0 dispersed
Lsi04g01265 Lsi-Chr4:19877028 Lsi05g00670 Lsi-Chr5:8832092 5.94E-27 dispersed
Lsi04g01266 Lsi-Chr4:19919294 Lsi05g00670 Lsi-Chr5:8832092 2.58E-28 dispersed
Lsi05g00670 Lsi-Chr5:8832092 Lsi05g00675 Lsi-Chr5:8937352 0 dispersed
Lsi09g01910 Lsi-Chr9:27937100 Lsi05g00670 Lsi-Chr5:8832092 2.62E-15 dispersed
Lsi05g00670 Lsi-Chr5:8832092 Lsi05g00671 Lsi-Chr5:8855325 0 tandem
Lsi02g00673 Lsi-Chr2:6041239 Lsi05g00670 Lsi-Chr5:8832092 0 wgd
Lsi04g01264 Lsi-Chr4:19862104 Lsi05g00670 Lsi-Chr5:8832092 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83636 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00670 - - csv:101210952 1584.31