Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00671 ATGAGGACAAATCAAGTCGTCACCACAGCTGACTGTTGCCGTTCATACCGACCAACTCCACTCCAAGAACCGCAAAATTTCCTTGTCAATGGCCACATTGTCAAAGAAGAAAAAGCAAGTCACTCATCGTTTTCCTTTTCTGAGTGTCGTGCTAATCGGTCTACAACGACTCCATTGAACTCGTCTGTAGCTATCTCTGATTCCTTAACGGCTCAAAACCCATATCTCAGAGATGGCCTTAGTCTGGTCTCTAGAAATGGAATTTTTGAATTGGGTTTTTTCTTCAGTCCTGGATTTCCCGGCAACCGTTACTTGGGAATCTGGTTCAAGAATCGCCGAGGTCCGACCTCTGTTTGGGTTGCCAATAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAATCTTACACTCTACAGCCATAATTCCACTGCCATTGTTTGGTCCGCCAGGTTACTGAGAAAAGTCCCCAATGGGATACTCCAACTATTGGACACCGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAGCTATTCATGGCAAAGCTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAACATAGAAAGAAGATTAGAGGCTTGGAAGAATCTCAATGATCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGACTGTCATGTGGAAAGGTTCCAAAAAGTACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCCGCAGCGCCAATTTTGAACTTCAACTTTGTTTCAAATGAGGATGAGGTTTACTACCAATACTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCGAATTACGTGCGCATATTGTACTTGTGGTCTGCAGCTGAAACACGGTGGAGAGTTTACACTTCATTACCAAGAGATTACTGTGACAATTATGCCCTGTGTGGCCCTTATGGATATTGTGATATAAGAGTTACTCCATCTTGTTTATGTCTAGAAGGTTTCAAGCCAAGATCACCTGATAGTTGGAAGGCTGGGGAATTTGCGGATGGTTGTGAACGAAACAAACTGATCAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGATACAAAGCATACTTGGGTCAACAAAAGCATGAATTTTGAAGAGTGCAAGCAAAAATGCTTGAGAAATTGTTCGTGTATGGCTTACGCAATGACAAATATCAGTGGCAGTGGCAGTGGCAGTGGCTGTGCTTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCGGACGCAGGACAGGATTTATATGTCAAAATGCTAGCATCAGAATTAGATGACCATGAGAAAATAGAAGCTCAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATTAACAGTGCCACAGATAACTTCTCACTTAATAATAAGCTAGGAGAAGGTGGCTTTGGCCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCAGTGAAGAGACTTTCACAGAGTTCTGGACAAGGAACGGATGAGTTTAAGAATGAAGTAATCCTGATTGCAAAACTGCAACATCGAAACCTTGTAAAACTTCTTGGTTGCTGCATTCAAGGAGACGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGCTTGGACTTCTTTATATTTGACCAAACACAACGTCAATTATTAAACTGGTCAAAACGGTACCGAATTATTTGTGGAGTTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGGTTGAGAATTATACACAGAGATTTAAAAGCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTTGGACTGGCTAAAACTTGTGGTGGGGATCAAACAGGAGGACGAACATTAAGAGTGGTTGGAACTTATGGATATATGGCACCAGAGTATGCTTTTGATGGACAATTCTCAGTGAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAACTTTCTGCCATTTGAATGACCAAAATCTAATAGCATACGCATGGCGATTGTGGAAAGAAGGAAATATTGAAGAATTGATCGACGATGCCATTCAAGAGACATGCAGCCTTTCGGAGGTACTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCTAATGATCGACCCACGATGTCATTGGTGGTGATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCCAAACAGCCCGGATTTTTCATAGAAAATGAAGCCATTGCAATGAAAAGAAGCTCAAGTAAAGATAAATCAACTTCAACTAATGAATTGACTATTACGCTCCCAGATCCGAGGTAA 2451 41.25 MRTNQVVTTADCCRSYRPTPLQEPQNFLVNGHIVKEEKASHSSFSFSECRANRSTTTPLNSSVAISDSLTAQNPYLRDGLSLVSRNGIFELGFFFSPGFPGNRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLVMNITTGNLTLYSHNSTAIVWSARLLRKVPNGILQLLDTGNLVLRDREDENPQSYSWQSFDYPTDTLLPGMKLGWDLRNNIERRLEAWKNLNDPSPGNLSWRMELHEYPETVMWKGSKKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNEDEVYYQYSVVNKSHSVMLVMNQSNYVRILYLWSAAETRWRVYTSLPRDYCDNYALCGPYGYCDIRVTPSCLCLEGFKPRSPDSWKAGEFADGCERNKLINCGDEVGFAQLNQLKLPDTKHTWVNKSMNFEECKQKCLRNCSCMAYAMTNISGSGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELDDHEKIEAQDLELPLFDLSLINSATDNFSLNNKLGEGGFGPVYKGKLTNGQDIAVKRLSQSSGQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDQTQRQLLNWSKRYRIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTGGRTLRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRTFCHLNDQNLIAYAWRLWKEGNIEELIDDAIQETCSLSEVLRCINISLLCVQQHPNDRPTMSLVVMMLGCEIPLSQPKQPGFFIENEAIAMKRSSSKDKSTSTNELTITLPDPR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8855325 8859391 - Lsi05G006710.1 Lsi05g00671 663163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00671 816 PANTHER - 66 474 - -
Lsi05g00671 816 SMART blect_4 73 197 IPR001480 -
Lsi05g00671 816 CDD B_lectin 75 197 IPR001480 -
Lsi05g00671 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 66 474 - -
Lsi05g00671 816 Pfam D-mannose binding lectin 116 223 IPR001480 -
Lsi05g00671 816 ProSiteProfiles Bulb-type lectin domain profile. 67 191 IPR001480 -
Lsi05g00671 816 Pfam S-locus glycoprotein domain 256 363 IPR000858 GO:0048544
Lsi05g00671 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Lsi05g00671 816 PIRSF SRK 465 816 IPR024171 GO:0004674
Lsi05g00671 816 PIRSF SRK 53 482 IPR024171 GO:0004674
Lsi05g00671 816 SMART serkin_6 500 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00671 816 Gene3D - 62 194 IPR036426 -
Lsi05g00671 816 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Lsi05g00671 816 Pfam PAN-like domain 386 453 IPR003609 -
Lsi05g00671 816 ProSiteProfiles Protein kinase domain profile. 500 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00671 816 ProSiteProfiles PAN/Apple domain profile. 385 468 IPR003609 -
Lsi05g00671 816 CDD STKc_IRAK 506 770 - -
Lsi05g00671 816 MobiDBLite consensus disorder prediction 797 816 - -
Lsi05g00671 816 Pfam Protein tyrosine and serine/threonine kinase 501 769 IPR001245 GO:0004672|GO:0006468
Lsi05g00671 816 SUPERFAMILY Protein kinase-like (PK-like) 485 779 IPR011009 -
Lsi05g00671 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 117 228 IPR036426 -
Lsi05g00671 816 MobiDBLite consensus disorder prediction 796 816 - -
Lsi05g00671 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 473 813 - -
Lsi05g00671 816 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Lsi05g00671 816 PANTHER - 473 813 - -
Lsi05g00671 816 CDD PAN_AP_plant 383 466 - -
Lsi05g00671 816 SMART ntp_6 386 467 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00685 Lsi-Chr2:6142142 Lsi05g00671 Lsi-Chr5:8855325 1.08E-47 dispersed
Lsi02g02788 Lsi-Chr2:34124583 Lsi05g00671 Lsi-Chr5:8855325 2.56E-138 dispersed
Lsi05g00671 Lsi-Chr5:8855325 Lsi05g00675 Lsi-Chr5:8937352 0 proximal
Lsi05g00670 Lsi-Chr5:8832092 Lsi05g00671 Lsi-Chr5:8855325 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83637 PF07714 PK_Tyr_Ser-Thr 7.50E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00671 - - csv:101210952 1425.99