Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00675 ATGAACATTACTACAGGAAATCTTACACTCTATAGCCATAATAACCCAGCCGTTATTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAATGGGGTGTTGCAACTACTGGACAATGGAAATCTTGTGCTGAGAGATAGTGAAGATGAAAATCCCCAAAACTACTGCTGGCAGAGCTTTGATTACCCCACAGACACTCTCTTGCCAGGAATGAAGCTAGGCTGGGACTTGAGAAATAACATTAATAGAAGATTGTCTGCTTGGAAAAATCCCAATGACCCATCTCCTGGGAGCTTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGACTGTTATGTGGAATGGCTCCAAAAAATACTTCAGGCATGGACCATGGAATGGTGTGAGAATCAGTAGCTGGCCTATAGGCTTAGCGCCAAACTTGGTACTCCACTTTGTTTCCAATGAGGATGAGGTTTACTACCAATACACGCTAATAAATGAGTCTTATACAGTGATGTTGGTGATGAACCAATCCATTTACGTTCGGACAGTGTACTTATGGTCTGTAAACGAGAGAGAATGGACGGTTTACAATACATTACCAAGAGATTTTTGTGACAGTTATGCTGTGTGTGGTCCCTATGGCTATTGTGATTTTAGGGTCATTCCATCTTGTAGCTGTCTAGAAGGATTTAAGCCAAGATCACTTCAGAATTGGATGGCAGGGGACTTCGTAGATGGTTGTGAACTAAATAAACCGATGAATTGTGTCGACAAAGTCGACTTTGCACAATTCAACCAAATGAAATTGCCTGACACAACGCATACTTGGGTGAACGGAAGCATGAATCTTGAAAAATGCAAGCAAAAGTGCTTGAGGAATTGTTCTTGTATGGCTTATGCCAATACAAATATCAGTGGGAGTGGAAGTGGCTGTGCCTTATGGATAGGGGATATCATTGACCTGAAAATAATTCCTGGTGCTGGACAGGATTTATATGTTAAGATGCTAGCATCAGAATTAGTCAAGCATGGAAAGGCACAAAAAAGATTAAATCCTAAGGTGAAGATTGCTTTGGTTGGGATTGCCATGGGTCTAGTTTTGGCTATCCTCTTCATATGCTTTTATATTTTCAAAAAGAGATCAACATTCAAAGATGGCCATGAGAAGTTAGAAGCAGAAGACTTGGAGCTTCCCTTGTTTGATTTATCCTTGATAAATAGTGCCACTAATAACTTCTCACTTGAAAATAAGCTCGGAGAAGGTGGCTTTGGACCAGTATATAAGAAATTTTGGGGAACTTTGAATTTTCAGTGTAAGCTTGCAAATGGACAAGATATTGCTGTGAAGAGACTTTCAAAGAGTTCTGGACAGGGAACGAAGGAGTTCAAGAATGAAGTAATCCTAACTGCAAAGCTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTACGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGGTAAAACTCTCTTAAATTTTCAATTTACTAATGAAAGAAAACGTCAACTATTAAACTGGTCGCAACGATATCACATTATCTGTGGGATTGCAAGAGGGCTCGTGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAACGTTTTACTTGATATGGATATGAATCCAAAAATTTCTGATTTTGGTCTTGCTAAAACTTGTGGAGAATATGCTTTTGATGGACAATTCTCAATAAAATCCGATACATTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAGGATTTCGTCACTTGAATGACCAAAATCTCATTGGTTATGCATGGCAATTATGGAAAGGGGGAAATCCAGGAGAATTGATTGATGACACAATTCAAGAAACATGCAATTTCTCAGAGGTATTGAGATGTATCAATATCAGTTTGCTGTGTGTTCAACAACATCCCAATGATCGACCCACGATGTCGTCGGTAGTTATGATGTTAGGGTGTAAAATTCCTTTATTACAACCAAAACAACCAGGATTTTTTGCAGGAAATGAAGGCATTGAAATGGATGGCTTCTCAGGTAAAGATAAATCAGCTTCAACCAGTGGGTGA 2142 38.89 MNITTGNLTLYSHNNPAVIWSARLLRKVPNGVLQLLDNGNLVLRDSEDENPQNYCWQSFDYPTDTLLPGMKLGWDLRNNINRRLSAWKNPNDPSPGSFSWRMELHEYPETVMWNGSKKYFRHGPWNGVRISSWPIGLAPNLVLHFVSNEDEVYYQYTLINESYTVMLVMNQSIYVRTVYLWSVNEREWTVYNTLPRDFCDSYAVCGPYGYCDFRVIPSCSCLEGFKPRSLQNWMAGDFVDGCELNKPMNCVDKVDFAQFNQMKLPDTTHTWVNGSMNLEKCKQKCLRNCSCMAYANTNISGSGSGCALWIGDIIDLKIIPGAGQDLYVKMLASELVKHGKAQKRLNPKVKIALVGIAMGLVLAILFICFYIFKKRSTFKDGHEKLEAEDLELPLFDLSLINSATNNFSLENKLGEGGFGPVYKKFWGTLNFQCKLANGQDIAVKRLSKSSGQGTKEFKNEVILTAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFGKTLLNFQFTNERKRQLLNWSQRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHLNDQNLIGYAWQLWKGGNPGELIDDTIQETCNFSEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCKIPLLQPKQPGFFAGNEGIEMDGFSGKDKSASTSG 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8937352 8941493 + Lsi05G006750.1 Lsi05g00675 663167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00675 713 Gene3D - 2 69 IPR036426 -
Lsi05g00675 713 SUPERFAMILY Protein kinase-like (PK-like) 392 676 IPR011009 -
Lsi05g00675 713 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 706 - -
Lsi05g00675 713 Gene3D Transferase(Phosphotransferase) domain 1 492 680 - -
Lsi05g00675 713 Pfam S-locus glycoprotein domain 120 228 IPR000858 GO:0048544
Lsi05g00675 713 ProSiteProfiles PAN/Apple domain profile. 250 331 IPR003609 -
Lsi05g00675 713 Gene3D Phosphorylase Kinase; domain 1 371 491 - -
Lsi05g00675 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Lsi05g00675 713 PIRSF SRK 1 712 IPR024171 GO:0004674
Lsi05g00675 713 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00675 713 Pfam D-mannose binding lectin 4 88 IPR001480 -
Lsi05g00675 713 Pfam PAN-like domain 253 316 IPR003609 -
Lsi05g00675 713 Pfam Protein tyrosine and serine/threonine kinase 408 675 IPR001245 GO:0004672|GO:0006468
Lsi05g00675 713 CDD PAN_AP_plant 247 329 - -
Lsi05g00675 713 ProSiteProfiles Bulb-type lectin domain profile. 1 56 IPR001480 -
Lsi05g00675 713 SMART serkin_6 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00675 713 SUPERFAMILY alpha-D-mannose-specific plant lectins 5 93 IPR036426 -
Lsi05g00675 713 PANTHER - 4 706 - -
Lsi05g00675 713 SMART ntp_6 251 330 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00670 Lsi-Chr5:8832092 Lsi05g00675 Lsi-Chr5:8937352 0 dispersed
Lsi05g00675 Lsi-Chr5:8937352 Lsi02g00681 Lsi-Chr2:6103145 0 dispersed
Lsi05g00671 Lsi-Chr5:8855325 Lsi05g00675 Lsi-Chr5:8937352 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83638 PF07714 PK_Tyr_Ser-Thr 1.80E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00675 - - csv:101210952 1142.87