Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00683 ATGGCCACCACCTCCCACACATCCGACGAAGAACAATTAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAACAGTCCAACGGTGGGTTCTGTCGGAGCCTGTACGGAGTCGGGTCAGTTCTTGACCCGACAGCCAAATGGGTCCGAGAATGGAACCGGGTTTTCCTTCTCGTCTGCGCGGCGGGGCTTTTCGTCGACCCTCTTTTTCTCTACACACTATCCATAAGCGAATCGTGGATGTGCATCTTTATCGATGGGTGGTTGGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCCTTGCACCTTTGGAACATCTGGCTTCAGCTCAAGACTGCCACAAAGTCCTCCTTTGCCGGTGGCGGCGGTGATGCCATGGCGGATAATAGAGGCCGCCTCAGAGATACTACCCCACGCGCCGTCGCTCTCCGGTATTTCAAGTCCAAGAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCTCTTCCTCAGGTTGTATTATGGGTTGTAATTCCTGGAATAATGAAAGAAGGAAGAGTGACATTGGTAATGACAGTATTATTAATAATATTTTTGTTTCAATATTTGCCAAAACTATACCATTCCGTTTGCTTGTTGCGGCGACTCCAAAACCTATCTGGCTACATCTTTGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCTCATCTTGTTATCAATCAAAGTCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAAAGCACCACTGAATGGCTGGAAGTAGTGTTCAATATCATTGTCCTCACCAGTGGACTCCTGTTGGTCACCATGTTGATTGGAAATATCAAGGTATTTCTGCATGCAACCACGTCAAAGAAACAAGGAATGCAGCTGAAGATGAGGAACCTAGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGGTTCCGGCAGCGTGTTCGGAACTACGAGCGGCAGCGGTGGGCAGCGATGCGGGGTGTGGACGAGTGCGAGATGATAAAAAATCTACCGGAAGGGCTACGACGAGACATAAAGTATCACCTTTGCTTGGATTTGATAACGAGAGAAGGAGATCCAGTACAAAGAATGCTATTCGTAGTGCGAGGGCATCTCCAAAGCAGCCAAGTCTTACGCGACGGCGTAAAAAGCTGCTGCATGTTAGGCCCAGGCAACTTCAGCGGCGACGAGCTTCTATCCTGGTGTCTCCGCCGCCCCTTCATAGAGCGCCTTCCCCCTTCCTCCTGCACTCTCATCACGCTTGAGACGACCGAGGCCTTCGGCTTGGAGGCCGACGACGTCAAGTACGTAACGCAGCACTTTCGCTACACCTTCGTCAACGACAAGGTCAAGCGCAGCGCTCGCTATTACTCCCCTGGTTGGCGCACTTGGGCTGCCGTTGCCATTCAGCTTGCCTGGCGCCGATATCGCCACCGTCTCACCTTGACGTCTTTGTCGTTTATTCGGCCGCGCCGCCCGCTCTCACGGTGCTCTTCCTTGGGGGAGGATCGCCTCCGCCTCTATACGGCATTGCTTACTTCTCCTAAGCCCAATCAAGACCATTTTGATTTTTGA 1638 51.22 MATTSHTSDEEQLDEEEEEEEEEEEEQSNGGFCRSLYGVGSVLDPTAKWVREWNRVFLLVCAAGLFVDPLFLYTLSISESWMCIFIDGWLAITVTVLRCMADALHLWNIWLQLKTATKSSFAGGGGDAMADNRGRLRDTTPRAVALRYFKSKKGFFFDLFVILPLPQVVLWVVIPGIMKEGRVTLVMTVLLIIFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHLVINQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLITLETTEAFGLEADDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9081344 9090742 - Lsi05G006830.1 Lsi05g00683 663175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00683 545 Gene3D Jelly Rolls 369 464 IPR014710 -
Lsi05g00683 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 239 - -
Lsi05g00683 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 239 375 - -
Lsi05g00683 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 375 542 - -
Lsi05g00683 545 SUPERFAMILY cAMP-binding domain-like 306 462 IPR018490 -
Lsi05g00683 545 CDD CAP_ED 354 454 IPR000595 -
Lsi05g00683 545 MobiDBLite consensus disorder prediction 10 27 - -
Lsi05g00683 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 8 239 - -
Lsi05g00683 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 239 375 - -
Lsi05g00683 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 375 542 - -
Lsi05g00683 545 MobiDBLite consensus disorder prediction 1 32 - -
Lsi05g00683 545 SUPERFAMILY Voltage-gated potassium channels 46 301 - -
Lsi05g00683 545 Gene3D Helix hairpin bin 305 368 - -
Lsi05g00683 545 Coils Coil 6 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00683 Lsi-Chr5:9081344 Lsi07g00120 Lsi-Chr7:1352537 1.25E-43 dispersed
Lsi05g00683 Lsi-Chr5:9081344 Lsi09g00029 Lsi-Chr9:279115 6.16E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00683 K05391 - pvir:120676809 675.241