Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00685 ATGGCCGCCACCGCCACCTCCGCCACCCTCCTCCGGGCAACCCCTTTTCTTGGCCAAACCAGAGGCTCTCCCCAAAACCCCCTCAGAGACGTTGTCGCCATGGGAACTGGCAAATATACCATGGGAAATGATCTGTGGTATGGACCAGATAGAGTTAAGTACTTGGGGCCATTTTCAGCTCAGACTCCATCCTACTTGAACGGTGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGCTTGTCTGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTCGAGGTGATCCACGGGAGGTGGGCCATGTTAGGAGCGTTGGGTTGCATAACACCCGAAGTGCTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTGTGGTTCAAGGCAGGAGCCCAAATCTTCTCAGAAGGTGGTCTAGACTACCTAGGCAACCCCAACTTGGTCCACGCCCAAAGCATCCTAGCCGTCTTAGGGTTTCAAGTGGTTCTAATGGGTCTTGTTGAAGGATTCCGCATCAACGGCCTCGACGGAGTCGGCGAAGGCAACGACCTCTACCCGGGCGGTCAGTACTTCGACCCACTCGGACTAGCCGACGACCCCGTCACCTTTGCCGAGCTCAAGGTCAAGGAGATCAAGAATGGCCGTCTTGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTCACTGGAAAGGGCCCTCTTGAGAACCTTCTTGACCATCTTGATAACCCTGTGGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGCGCCTGGCTCATAA 795 54.09 MAATATSATLLRATPFLGQTRGSPQNPLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9123085 9125173 + Lsi05G006850.1 Lsi05g00685 663177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00685 264 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 264 - -
Lsi05g00685 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
Lsi05g00685 264 Pfam Chlorophyll A-B binding protein 63 230 IPR022796 -
Lsi05g00685 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 264 IPR001344 GO:0009765|GO:0016020
Lsi05g00685 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00685 Lsi-Chr5:9123085 Lsi11g01355 Lsi-Chr11:22168602 1.69E-124 dispersed
Lsi05g00685 Lsi-Chr5:9123085 Lsi01g00172 Lsi-Chr1:1668479 5.64E-119 transposed
Lsi05g00685 Lsi-Chr5:9123085 Lsi10g01537 Lsi-Chr10:19772142 9.15E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00685 K08914 - csv:101207278 529.635