Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00688 ATGAGTCTCCTTATGAGTCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACGTTTACAACAGCCCAACACGCCAGGTAAATGTGTCGTGCCTATGAAATTTCTTGGGAGACAATCCGCAGCTGATGATCAATGTAAAGATATTGAGTTGGTGGAGAATAAAAACAGCAGCAATTCTTTTCAAGCCGTCGGTTTTGTAAATGCCATTTCTGCGACAAGTTTCCTTGCAGTAGACGCTGCAAAGGCTGAAACTTTAAAGCATATGTCGGAAGGAGCTGCTTCTGTTTATACTCTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTTGGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTTAGTTTCACAAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACAAGTCTTTCCCCTTGCACACTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGAGCTTTTGGGTCAGGGAAGAGTAGAGCAGAGGTCGTTGGAAACTCTGTTGCTTTCTCATTAGGACTTGCTACAACCCTAGCGCTATTAGGCATAGGAGCTTCTTTTGCTGGAAAGGCATATGGTCAGATTGGCCAAGGATTACCATTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTACTGGAGATAATTGAGTTGCGATTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCGGCTGCCAGCTTTCCATCAAGTAATTGGCCTCTTCATTTCCTTTTTACCACTGGTTACTTATCTGGATGCCCTAACAAGATTTTTATATCTGATGTAATAGGTGCGCAAGCATATCTAGCCGGGCTAACATTTGCCTTGGCTGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGGATCCTGTCATCGGGGGTAGCCTCCTTTTGACATACACAACCGGCTACGTCGTGCCGTTACTTCTTGCTGCTTCATTTGCTGGAGCATTGCAGAGCCTTCTGTCTTTCCGCAAGTTCTCATCGTGGATTAATCCTATAAGTGGTGCATTACTGTTGGGTGGAGGTGTTTATACATTCTTGGACAGACTATTTCCAGTCACAATGGCAATGTAG 1161 44.7 MSLLMSHSGGFGINSIKISTSKRLQQPNTPGKCVVPMKFLGRQSAADDQCKDIELVENKNSSNSFQAVGFVNAISATSFLAVDAAKAETLKHMSEGAASVYTLADGGIGDWFGGFLYLAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAAASFPSSNWPLHFLFTTGYLSGCPNKIFISDVIGAQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYTFLDRLFPVTMAM 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9155968 9161346 + Lsi05G006880.1 Lsi05g00688 663180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00688 386 Pfam Cytochrome C biogenesis protein transmembrane region 142 376 IPR003834 GO:0016020|GO:0017004
Lsi05g00688 386 PANTHER CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED 60 256 - -
Lsi05g00688 386 PANTHER CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED 284 386 - -
Lsi05g00688 386 PANTHER CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEIN 60 256 - -
Lsi05g00688 386 PANTHER CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEIN 284 386 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00688 - - bhj:120089728 624.009