Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00699 ATGGCGTTCCCTTTATCTTCGGCCGTTCTCTCTCGCCGGTTTTCTCTCTCATCTGCCTCTCACATTACGGAACACAGATTTCTTCATACGCATTGCATGATTCGATTTACTCAGCCCTCTGGAAGCTCGATTCTTCCCAAGCTCTCTTCCACGTCTGCTAATAACTCATCACTGGTTGGTCCTGGTTTCACTCTAAAAGTGTTCAATTCCTCATATATATCACAATTCATGCAGGGATTAGAGGACCAGCATAACTTTCTCCAACAGTCGTGCATTTCACCTTTTGAACATGGAAAGAGGGAAATTAGGAAATTGATTGCTATGATCCTTATATGTATCCAAATTTCTTCACCACTGCCCCTGCTGAATTGGGACTTTCAATCTATTCACCCTGCAATGGCAGTACTCTATTCGCCTGACACCAAGGTTCCAAGAACAGGAGAACTTGCATTAAGGAGAGCAATTCCTGCAAACACAAGCATGAAGGCAATACAGGACTCTTTAGAAGAGATATCGTATTTGCTAAGGATTCCGCAAAGAAAGCCTTATGGAACCATGGAGGGTAATGTGAAGAAAGCTCTCAAGCTGGCAGTTGATGAGAAGGACTTGATTTTGGGAAGTATACCACCAGAGTTGAAGGAAAAAGGTTTATCGACGTACACAACTCTAATTGAAGGCAAGGGTGGACTGCAAACTCTCCTCCAAAGCATTAGGGATAATGACCCAGATAAAGTGTCTGTAGGACTTGCATCATCACTTGATATTGTTGCAGAGTTGGAATTGTTGCAGGCCCCTGGATTGTCATTTTTATTGCCTGAGCAATACTCGAAGTATCCAAGGTTGACAGGGAGAGGAACTGTTGAATTTACCGTTGAGAAAAGAGATGGTTCATCTTTTTCCCCACAAGCAGGTGGTGAATCTAGCAATACAGCCACAATTCAGGTTGTTATAGATGGATATTCAGCACCATTGACAGCAGGGAATTTTGCAAAACTGGTAGTTGATGGAGCTTATGATGGAGCAAAACTCAGTTCTACTAGTCAAGCTGTTCTTTCTGAAAATAGTCAGGATAAGAACAAAGGCTATAGCATTCCCTTGGAAATAAAGCCATCAGGACAATTCGAACCCTTATACCGAACAACCCTCAGTGTGCAGGATGGAGAATTGCCAGTTTTACCTCTGTCTGTGTATGGAGCAGTTGCCATGGCACATAATGAAGATTCAGAGGAATATTCTTCACCATATCAATTCTTCTTCTATCTCTATGATAAAAGAAATTCTGGCTTGGGAGGACTATCCTTTGATGAAGGGCAATTTTCAGTCTTGGGATACACAACCGTTGGAAGAGACATCCTTCCTCAGATCAAAACTGGAGACATAATTCGATCTGCGAAACTCGTGGAAGGTCAAGATCGCCTCATTCTACCAAATGAGAATTGA 1440 42.43 MAFPLSSAVLSRRFSLSSASHITEHRFLHTHCMIRFTQPSGSSILPKLSSTSANNSSLVGPGFTLKVFNSSYISQFMQGLEDQHNFLQQSCISPFEHGKREIRKLIAMILICIQISSPLPLLNWDFQSIHPAMAVLYSPDTKVPRTGELALRRAIPANTSMKAIQDSLEEISYLLRIPQRKPYGTMEGNVKKALKLAVDEKDLILGSIPPELKEKGLSTYTTLIEGKGGLQTLLQSIRDNDPDKVSVGLASSLDIVAELELLQAPGLSFLLPEQYSKYPRLTGRGTVEFTVEKRDGSSFSPQAGGESSNTATIQVVIDGYSAPLTAGNFAKLVVDGAYDGAKLSSTSQAVLSENSQDKNKGYSIPLEIKPSGQFEPLYRTTLSVQDGELPVLPLSVYGAVAMAHNEDSEEYSSPYQFFFYLYDKRNSGLGGLSFDEGQFSVLGYTTVGRDILPQIKTGDIIRSAKLVEGQDRLILPNEN 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9319519 9324870 + Lsi05G006990.1 Lsi05g00699 663191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00699 479 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 311 460 IPR002130 GO:0000413|GO:0003755
Lsi05g00699 479 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 298 456 IPR002130 GO:0000413|GO:0003755
Lsi05g00699 479 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP37, CHLOROPLASTIC 1 479 IPR044259 -
Lsi05g00699 479 SUPERFAMILY Cyclophilin-like 312 463 IPR029000 -
Lsi05g00699 479 Gene3D - 157 262 IPR023222 -
Lsi05g00699 479 Gene3D - 306 470 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00699 - - - bhj:120089751 873.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01394 Lsi-Chr3:24894835 Lsi05g00699 Lsi-Chr5:9319519 8.39E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g274 . . . . . . . Bma13g00966 . . . . . . . . . . . . . . . . Cla10g00621 Cam10g0614 Cec10g0642 Cco10g0617 Clacu10g0644 Cmu10g1462 Cre10g0855 . . Cone14ag1081 Cone15ag1072 . Csa03g00607 . . . . . Bda12g00859 . . . . . . . . . . Car16g00809 . . . . . . . . . . . . . . . . Lsi05g00699 . Chy06g01716 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007260 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00699 Lsi_Chr05 FPKM 0.358677 0.253052 0.683623 0.325416 0.440312 0.729731 0.708943 1.090217 1.323449 1.092533