Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00704 ATGAAAACGATTTTAAAAGGAATAAAAGGAGTGGTTCGTCCAGGTGAGATGTTAGCTATGATGGGTCCATCAGGCTCAGGCAAGACCACACTTTTGACAGCTCTAGGTGGCCGGCTAAGTAGCAGTGTTGTCGGTGGCGGTCGACTAACCGGAACCATTACCTACAATAACAAACCCTTCTCAAACAAAATGAAAAGAAACATAGGGTTTGTTACACAAGATGACATTCTTCTACCCCATTTGACAGTAATGGAAACCCTTGTTTTCACTGCTCTTCTAAGGCTTCCGAATGAGTTGACGGTACAAGAGAAAGCGGGTCAAGCGGAGGCGGTTGTTTCGCAGCTAGGGCTTAGTAAGTGCAAGAACAGTGTGGTGGGGAGTCAGATGGTGAGAGGGGTTTCAGGAGGAGAAAGGAAAAGGGTTAGTATTGCTCAAGAAATGCTTATAAACCCTAGTTTGTTGTTTCTTGATGAACCGACTTCGGGTCTTGACTCGACTACGGCTCAGAGGATTGTTTCCACTCTTTGGGAGGTTGCTAATAATGGTGGGAGGACTGTGGTGATGACTATTCATCAGCCTTCTAGTAGACTTTTTTATATGTTTCATAAGATTTTGTTGCTTTCTGAAGGCAATACCATGTACTTTGGGAAGGGATCAGAAGCTATGGATTATTTTTCTGCTCTTGGTTATTCTCCTTCTGTGCCTATGAACCCTTCTGATTTCTTATTGGATCTTGCTAATGGTTTGTCAATGAATGATCCAGAAGAGGAGGCAGGGATGGTGAAGGAGAAACTTGTTTCATGTTACAAAAACAATAATATAGCTGAAAATTTGATGTTAGAGTTACAAGAAAGTGATGAGAATTTGGTTGAAGATGGAGCAGAGGACAAGAGTTATGGACGTTGGTCAACAACTTGGTGTCAACAATTCTCTGTGCTGTTGAGAAGAGGAATTAAGGAAAGAAGGCACGAATCTTTTTCTGGACTCAAGATTGGCCAAGTTTTAGCTGTTGCTATCATGAGTGGACTCTTATGGTGGCAATCTGATGATTCACATTTACAAGATAAGGAAAGATCCTCAGGGATGTACAGGCTCTCATCCTACTTCATCTCAAGAACCACAAGCGACCTCCCGATGGAGCTCGTCCTTCCCACTGTCTTCGTCATCATAATCTACGTGATGGCGGGGTTGAAACGCACGGCGGCGAGCTTCTTCGCCACTCTATTTTCTCTAGTCCTAAGTGTTTTGGTAGCCCAAGGGTTTGGGCTGGCCATTGGAGCCCTTGTTTTGGACCAAACTTCAGCCACCACACTTGGATCAGTCATCATGCTTTGTTTCCTACTAACATCAGGCTATTTTGTTCAGCATGTGCCAAAGTTTATTGCTTGGACTAAGTACATTTCTATTGGTACCTATAGTTACAAGCTTTTGTTGATATCTCAATATAAAGCTAGTGATACTTATCCATGTCCAGGTAAGAATGGAGGAAAGCTATGTGAAGTTGGAGAGTTCCCTGCAATTAAGCAAGTAGGTCTTGATGGGAAACTCACTACTGTTTTGGCTTTGGTTGCTATGCTTCTTGGATATCGTCTTGTTGCTTACATTGCTTTGATGAGGATTGGTGTAACCAAAAGGAGCTAG 1641 42.9 MKTILKGIKGVVRPGEMLAMMGPSGSGKTTLLTALGGRLSSSVVGGGRLTGTITYNNKPFSNKMKRNIGFVTQDDILLPHLTVMETLVFTALLRLPNELTVQEKAGQAEAVVSQLGLSKCKNSVVGSQMVRGVSGGERKRVSIAQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWEVANNGGRTVVMTIHQPSSRLFYMFHKILLLSEGNTMYFGKGSEAMDYFSALGYSPSVPMNPSDFLLDLANGLSMNDPEEEAGMVKEKLVSCYKNNNIAENLMLELQESDENLVEDGAEDKSYGRWSTTWCQQFSVLLRRGIKERRHESFSGLKIGQVLAVAIMSGLLWWQSDDSHLQDKERSSGMYRLSSYFISRTTSDLPMELVLPTVFVIIIYVMAGLKRTAASFFATLFSLVLSVLVAQGFGLAIGALVLDQTSATTLGSVIMLCFLLTSGYFVQHVPKFIAWTKYISIGTYSYKLLLISQYKASDTYPCPGKNGGKLCEVGEFPAIKQVGLDGKLTTVLALVAMLLGYRLVAYIALMRIGVTKRS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9436452 9439254 - Lsi05G007040.1 Lsi05g00704 663196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00704 546 Pfam ABC-2 type transporter 355 481 IPR013525 GO:0016020|GO:0140359
Lsi05g00704 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 227 IPR027417 -
Lsi05g00704 546 SMART AAA_5 14 211 IPR003593 -
Lsi05g00704 546 Pfam ABC-2 type transporter 191 266 IPR043926 GO:0140359
Lsi05g00704 546 ProSitePatterns ABC transporters family signature. 133 147 IPR017871 GO:0005524
Lsi05g00704 546 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 234 IPR003439 GO:0005524
Lsi05g00704 546 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 354 541 - -
Lsi05g00704 546 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 2 350 - -
Lsi05g00704 546 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 354 541 - -
Lsi05g00704 546 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 350 - -
Lsi05g00704 546 Pfam ABC transporter 5 161 IPR003439 GO:0005524
Lsi05g00704 546 Gene3D - 1 228 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00704 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213406 934.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01787 Lsi-Chr3:29296007 Lsi05g00704 Lsi-Chr5:9436452 1.28E-180 dispersed
Lsi05g00513 Lsi-Chr5:6430307 Lsi05g00704 Lsi-Chr5:9436452 4.28E-154 dispersed
Lsi05g00704 Lsi-Chr5:9436452 Lsi07g00779 Lsi-Chr7:8577334 0 dispersed
Lsi05g00704 Lsi-Chr5:9436452 Lsi05g00706 Lsi-Chr5:9455411 3.98E-151 proximal
Lsi05g00704 Lsi-Chr5:9436452 Lsi05g00705 Lsi-Chr5:9451100 1.11E-70 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00704 Lsi_Chr05 FPKM 3.361789 3.167279 5.726375 5.004066 3.776512 3.66288 4.046129 2.052193 1.085555 1.72236