Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00707 ATGAACCGTGTGGCGATCAGCGGTGTTGCGAACATTACGCCGAGGCAGTTTCTAGCTCACCTTGGGAAGAAGGAGATGAAGGGTATTGTGAAGCCTTGTGATGTGTTCATAAACCATAGAGGCGTCGACACGAAGAAGACGGTGGCAGCATTGCTGTACGACCGGCTGGTTCGGGTGAACCTGAGGCCATTTCTCGACTACAGGAATTTGAAGCCTGGAGAGAAGCTGTTCGATGAAATTCATGGTGCCATCAGACAGTGTAAAGTTGGTGTTGCTGTGTTTTCACCTCGTTATTGTGAGTCTTATTTTTGCCTTCATGAGTTGGCTATGATCATCGAGTCCAACAAGAAGGTCATTCCTATCTTTTGCGATATAAAAGCATCTGAGCTTCGCATAGAGGATAATCATGAATATGAGATTGATGAGCTGAGAAGGACCTTATCAGAAGTTGTCACGAAGGCTTCAAATATCGTCATAAGGAGTTTGATTGAGATGGACTGA 501 45.31 MNRVAISGVANITPRQFLAHLGKKEMKGIVKPCDVFINHRGVDTKKTVAALLYDRLVRVNLRPFLDYRNLKPGEKLFDEIHGAIRQCKVGVAVFSPRYCESYFCLHELAMIIESNKKVIPIFCDIKASELRIEDNHEYEIDELRRTLSEVVTKASNIVIRSLIEMD 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9496434 9499405 - Lsi05G007070.1 Lsi05g00707 663199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00707 166 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 150 IPR035897 -
Lsi05g00707 166 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 28 145 - -
Lsi05g00707 166 SMART till_3 32 157 IPR000157 GO:0007165
Lsi05g00707 166 Pfam TIR domain 34 130 IPR000157 GO:0007165
Lsi05g00707 166 PANTHER COP1-INTERACTING PROTEIN-RELATED 28 145 - -
Lsi05g00707 166 ProSiteProfiles TIR domain profile. 31 158 IPR000157 GO:0007165
Lsi05g00707 166 Gene3D - 22 151 IPR035897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00707 - - - csv:101213881 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00707 Lsi-Chr5:9496434 Lsi08g00139 Lsi-Chr8:2990697 3.28E-15 dispersed
Lsi02g00720 Lsi-Chr2:6501792 Lsi05g00707 Lsi-Chr5:9496434 1.02E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g266 . . . . . . . . Cmo16g00850 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0126 Cone9ag0151 . . . Csa03g00615 . . . . . . . Bpe01g00410 . . . . . Cma04g00910 . Car04g00855 . Cpe14g00686 . . . . . . . . . . . . . . . Lsi05g00707 . Chy06g01710 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002140 0 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 5 3 2 2 2 2 2 2 2 2 3 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00707 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0