Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00709 CTACTACTTTTCACCGTCTTTGTCTTTGATGTCATTGCTTTTGGCTTGGCCATTGCAGCTGAGCAAAGGAGAAGCATTGCAAAGATAGTTGAAGACACAGATGCAAAAAGAAACTATTGTGTATATGACTCAGACATTTCAACTGGATTAGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGTCACATCCTCATAATGGTGGCTAGCCGCTGCTTTTGCTGCGGCAAACCTCTGAGTCCTGGTGAGCAAACCAATATGTTTTGGCATCGAATTCTTGTACCAAAAACAGATGGTTTTTTTATACTGGTATCATGGTATGATATTGTCTATCGTTGTGAAATAATCTGTTTCAGGGTGTTTTTCTTCATCGCCGAGATTTGCCTGTTGGCGGGTTCGGCTAGGAATGCATATCACACCAAGTACAGAACAGTGCTTACTGATACTCCTCCCTCTTGTCAAATGTTGAGACGAGGAGTGTTTGCTGCAGGAGCAGCTTTCATTTTCTTCACTTCCATTGTTTCTCAGTTCTACTACGTTTGCTACTCGAGGGCCCGGGAGAGCTTTCAATCATACAACAAAGACACCGGCATTGGCATGAGTACCTACAAATGA 612 43.14 LLLFTVFVFDVIAFGLAIAAEQRRSIAKIVEDTDAKRNYCVYDSDISTGLGVGAFLFLMASHILIMVASRCFCCGKPLSPGEQTNMFWHRILVPKTDGFFILVSWYDIVYRCEIICFRVFFFIAEICLLAGSARNAYHTKYRTVLTDTPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYNKDTGIGMSTYK 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9561977 9563938 + Lsi05G007090.1 Lsi05g00709 663201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00709 203 PANTHER OS07G0462200 PROTEIN-RELATED 1 203 - -
Lsi05g00709 203 PANTHER - 1 203 - -
Lsi05g00709 203 Pfam Protein of unknown function (DUF1218) 54 171 IPR009606 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00709 - - - csv:101203051 290.426
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01317 Lsi05g00709 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00709 Lsi-Chr5:9561977 Lsi09g00623 Lsi-Chr9:6868209 1.23E-42 dispersed
Lsi02g00733 Lsi-Chr2:6725454 Lsi05g00709 Lsi-Chr5:9561977 1.06E-53 wgd
Lsi04g01317 Lsi-Chr4:20936166 Lsi05g00709 Lsi-Chr5:9561977 1.39E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g262 Blo03g00641 Blo03g01536 Bda07g00285 Bda09g00492 . Bpe02g01908 . . Cmo16g00849 . . Cma09g00881 . Car09g00799 Sed01g2080 Cpe06g00705 . Bhi09g03393 Tan01g4424 Cmetu12g0009 . Hepe01g1369 Mch11g1090 . Cla11g01779 Cam11g1843 Cec11g1864 Cco11g1874 Clacu11g2005 Cmu11g1814 Cre11g2222 Cone6ag0129 Cone9ag0153 . . Lsi04g01317 Csa04g02364 Chy07g00093 . . . . . Bpe11g00492 . Bma07g01190 . . . Cmo09g00871 Cma04g00909 Cma16g00787 Car04g00854 . Cpe14g00685 . . . . . . . . . . . . . . . Lsi05g00709 . Chy06g01707 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000667 4 4 5 4 2 2 4 3 2 3 3 3 4 3 2 4 2 3 4 3 3 3 3 3 3 3 3 5 4 1 95
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00709 Lsi_Chr05 FPKM 21.539507 23.073267 14.308265 13.071405 9.138341 8.751348 10.852244 18.562279 19.475163 19.826239