Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00710 ATGGATCGGGTGCTAAAGGCCGCAAGAGCATCCGGCTCTCTTAATCTTTCCAATCGCTCTCTCAGGCAACTAAGATTTAGGAGGTACCACTTTAATCTTGTTATGATCGAAGTGCATGTACCTGAATTTTTGGTTATAATCTTTAGTGATGTGCCAAGTGAGGTTTATCGGAGCTTGGATGCAGTTCAGGCGGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAACATTCAATTGTTGAATGAAGAACTGAGGAATTTGTCTTCTCTTACTGTATTAAATGTTAGTCACAACAAACTTTCTGAACTACCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCATTAATGAGAATACCTGAGGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCAGATCTGAAGGTAATTGTTTCCTACTGTGATCTGCACTCACTTCCACATCCCGAAATGGCATCAAACAACTCCACTTCCAGCTTGCCTGATGAACTTGCAAACTGCTCAAAATTGTCAAAGCTTGATGTGGAGGGGAACAAGCTAACGATGATATCCGAAAATTTGATTGCATCATGGACTATGCTCACTGAACTTAATGCATCAAAAAATTTGCTTAATGGATTGCCTGAGAACATTGGTAGACTATCACGCCTCATTCGCTTAAATATGTTCCAAAACAAAATTTCATCAATTCCACCTTCAATAAAGGATTGCTGTGCGCTTGCTGAGTTACATATGGGGAATAATTCAGTGAGTATGCTACCTGTGGAGATTGGGGCACTTTCGCATTTAGGGACTTTAGATCTGCACTCAAACCAGTTGAAAGAGTATCCAGTTGAGGCATGCAAGTTGCATCTCTTGGTCCTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCTCAGAAATCGGTAAGATCAATGTAGTGCCAGAACTTATTGAGCAAGTGTTGCCTTCACTTCACTTGCCTGCTTCTGGAAGCCGAAATATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACTCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAAGTTTCTCCGAAGTAGACTTCCTGAAAATGAAGGTTCAGTATTTAATTTTATTTTTACTATTCGGGCCATTTATTATTTCACATCTGCAGTCTGTCTTCGTTATGAGCCTGAAGCTAGTAGAACTCAGAGAGGGGATGTAATAACTATGACAGCTAGAATGTCTATCACTTCAAAGGTCTTCTCTTCAAGCTCTGGCCTTGAATGGAATGGCTTTGATGATGATCAGGTGGAGCTTTCTCTAGAAGGGAAAGGGCTGAGTGTTGTGCCATCAGAAGTTTGGGAGTCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTACCAGTTGAACTTTCCTCGTGTAGTTCACTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATTTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGATTTCAAGCGATTTCCATGCTACAGGTTTTAGATCTTAGTGGTAATATAGCATCCTTGCCAGAGCACCCAACATTTTCCAACTTACCACTTCTGCAAGAGCTTTACCTAAGGAGAATGCGGCTACATGAAGTTCCATCATCTATATTGGGCTTAAGGCAACTGCGGATACTTGATTTGAGTCAAAATTCAATTCAATTAGTTCCAGAGGGATTGAAGAATCTTGCTGCCCTTACTGAGCTGGACCTATCAGATAATAACATTTCAATGCTCCCCCCACAGCTGAGCTTGCTTGAACCCAGCCTACAGGTACTGAGACTGGATGGAAATCCACTAAGAAGGTACGACAATGCTTCATTTTGTTTCTTCCCTTTTAACATGAAATATTTGTTAACCAGTGGTCATATTTCATTATACAGTATTAGGAGGGCAATCTTGGACAAAGGAACCAAAGCTGTGTTAACATATTTGAAGGATAAATTGACTGAG 2154 41.41 MDRVLKAARASGSLNLSNRSLRQLRFRRYHFNLVMIEVHVPEFLVIIFSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLLNEELRNLSSLTVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPEEIGSATSLVKFDCSSNHLKELPGGLGRCSDLSDLKVIVSYCDLHSLPHPEMASNNSTSSLPDELANCSKLSKLDVEGNKLTMISENLIASWTMLTELNASKNLLNGLPENIGRLSRLIRLNMFQNKISSIPPSIKDCCALAELHMGNNSVSMLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPSEIGKINVVPELIEQVLPSLHLPASGSRNMTTLRKLLLTGNPIRTLRSSLVSGPTPALLKFLRSRLPENEGSVFNFIFTIRAIYYFTSAVCLRYEPEASRTQRGDVITMTARMSITSKVFSSSSGLEWNGFDDDQVELSLEGKGLSVVPSEVWESSELMKLDLSKNSLQELPVELSSCSSLQTLILSRNKIKDWPGAILKSLPNLICLKLDNNPLKQIPSDGFQAISMLQVLDLSGNIASLPEHPTFSNLPLLQELYLRRMRLHEVPSSILGLRQLRILDLSQNSIQLVPEGLKNLAALTELDLSDNNISMLPPQLSLLEPSLQVLRLDGNPLRRYDNASFCFFPFNMKYLLTSGHISLYSIRRAILDKGTKAVLTYLKDKLTE 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9575682 9586625 - Lsi05G007100.1 Lsi05g00710 663202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00710 718 SUPERFAMILY L domain-like 469 688 - -
Lsi05g00710 718 ProSiteProfiles Leucine-rich repeat profile. 514 535 IPR001611 GO:0005515
Lsi05g00710 718 PANTHER LRR RECEPTOR-LIKE KINASE 362 669 - -
Lsi05g00710 718 SUPERFAMILY L domain-like 70 386 - -
Lsi05g00710 718 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 259 346 - -
Lsi05g00710 718 PANTHER LRR RECEPTOR-LIKE KINASE 259 346 - -
Lsi05g00710 718 PANTHER LRR RECEPTOR-LIKE KINASE 164 270 - -
Lsi05g00710 718 PANTHER LRR RECEPTOR-LIKE KINASE 65 182 - -
Lsi05g00710 718 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 362 669 - -
Lsi05g00710 718 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 164 270 - -
Lsi05g00710 718 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 65 182 - -
Lsi05g00710 718 SMART LRR_bac_2 489 508 - -
Lsi05g00710 718 SMART LRR_bac_2 202 221 - -
Lsi05g00710 718 SMART LRR_bac_2 630 649 - -
Lsi05g00710 718 SMART LRR_bac_2 229 245 - -
Lsi05g00710 718 SMART LRR_bac_2 317 336 - -
Lsi05g00710 718 SMART LRR_bac_2 94 113 - -
Lsi05g00710 718 SMART LRR_bac_2 117 136 - -
Lsi05g00710 718 Gene3D Ribonuclease Inhibitor 441 574 IPR032675 -
Lsi05g00710 718 SMART LRR_typ_2 295 318 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 513 535 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 536 559 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 607 629 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 319 340 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 249 272 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 364 387 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 202 225 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 490 512 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 141 163 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 117 140 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 584 606 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 94 115 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 630 653 IPR003591 -
Lsi05g00710 718 SMART LRR_typ_2 655 677 IPR003591 -
Lsi05g00710 718 PRINTS Leucine-rich repeat signature 320 333 - -
Lsi05g00710 718 PRINTS Leucine-rich repeat signature 607 620 - -
Lsi05g00710 718 Pfam Leucine Rich Repeat 609 630 IPR001611 GO:0005515
Lsi05g00710 718 Gene3D Ribonuclease Inhibitor 184 403 IPR032675 -
Lsi05g00710 718 Gene3D Ribonuclease Inhibitor 50 183 IPR032675 -
Lsi05g00710 718 Gene3D Ribonuclease Inhibitor 575 670 IPR032675 -
Lsi05g00710 718 Pfam Leucine rich repeat 73 130 IPR001611 GO:0005515
Lsi05g00710 718 Pfam Leucine rich repeat 514 571 IPR001611 GO:0005515
Lsi05g00710 718 ProSiteProfiles Leucine-rich repeat profile. 632 653 IPR001611 GO:0005515
Lsi05g00710 718 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00710 - - - bhj:120091291 931.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00710 Lsi-Chr5:9575682 Lsi05g01160 Lsi-Chr5:19495433 5.16E-13 dispersed
Lsi05g00710 Lsi-Chr5:9575682 Lsi01g00619 Lsi-Chr1:4972022 2.11E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00710 Lsi_Chr05 FPKM 3.818792 3.638382 0.0 0.0 3.103951 3.693205 2.612604 0.0 0.0 0.0