Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00714 ATGGTGGTTGGTTTAGGTGAGTTCTTCGTCCATGGGGATAATGCTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTACGACAATACGTTCCATGCGGGATTTGGAGTAAACACGGCGGCCGTGAGCGGCGTACTTTTCAGAAGCGGAGAGGCGTGCGGCGCTTGCTTTTTAGTAATTTGCAACTACAACGTCGACCCCAAGTGGTGCCTCCGCCGCCGCGCCGTCACCGTCACCGCCACAAACTTCTGCCCGCCAAATAACAACGGCGGCTGGTGTAATCCCCCTCGGTCACATTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGCATTGTCCCTGTCCTTTACAAGAGGGTGAGTTGTAAAAGAAATGGAGGGGTTCGATTTACACTGAGAGGACAATCAAACTTCAATATGGTAATGATATCGAACGTTGGAGGTAGTGGAGATTTGAAGGCTGCATGGGTAAGAGGGTCGAGGACAAGGACGTGGATGCCCATGCATCGAAATTGGGGGGCAAATTGGCAAGCCAACGTCGACCTTCGAAATCAAAGAATGTCGTTTAAGCTCACTCTAGTTGATGGAACAACATTGGAGTTTGCCAATGTTGTTCCTTCCACTTGGAGGTTCGGACAGACATTTTCGTCTATGATTCAATTCTCTTAG 723 49.1 MVVGLGEFFVHGDNAWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGVNTAAVSGVLFRSGEACGACFLVICNYNVDPKWCLRRRAVTVTATNFCPPNNNGGWCNPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCKRNGGVRFTLRGQSNFNMVMISNVGGSGDLKAAWVRGSRTRTWMPMHRNWGANWQANVDLRNQRMSFKLTLVDGTTLEFANVVPSTWRFGQTFSSMIQFS 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9683404 9686943 - Lsi05G007140.1 Lsi05g00714 663206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00714 240 PRINTS Expansin signature 221 237 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 192 213 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 75 86 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 156 177 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 88 98 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 46 60 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 144 156 IPR002963 GO:0009664
Lsi05g00714 240 PRINTS Expansin signature 102 119 IPR002963 GO:0009664
Lsi05g00714 240 Pfam Expansin C-terminal domain 146 224 IPR007117 -
Lsi05g00714 240 Gene3D - 7 141 IPR036908 -
Lsi05g00714 240 Gene3D - 142 240 IPR036749 -
Lsi05g00714 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 145 IPR007112 -
Lsi05g00714 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 235 IPR007117 -
Lsi05g00714 240 SUPERFAMILY PHL pollen allergen 142 235 IPR036749 -
Lsi05g00714 240 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Lsi05g00714 240 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Lsi05g00714 240 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Lsi05g00714 240 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Lsi05g00714 240 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576
Lsi05g00714 240 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Lsi05g00714 240 Pfam Lytic transglycolase 51 135 IPR009009 -
Lsi05g00714 240 PANTHER EXPANSIN-A12 12 240 - -
Lsi05g00714 240 SUPERFAMILY Barwin-like endoglucanases 14 163 IPR036908 -
Lsi05g00714 240 SMART dpbb_1 51 135 IPR007112 -
Lsi05g00714 240 PANTHER EXPANSIN-A15 12 240 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00714 Lsi-Chr5:9683404 Lsi11g00969 Lsi-Chr11:15332481 1.34E-83 dispersed
Lsi05g00714 Lsi-Chr5:9683404 Lsi04g00406 Lsi-Chr4:3973635 2.54E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00714 - - bhj:120091876 481.485