Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00715 ATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCCTCCGCCTTCGCTTCCACCGCTTTCTCCGGCCGTCGCAGCTCCGTCGCCCTCCCGCAGTGCAGAGGCTTGAAGATCGCACATAGCTTCACTTCCCACTCTATAAGATCTACAAGATCTAATGCTAGATTTCCTCAGCGTTCTGCAACTATCGTCTGCGAAGCTCAGGAAACTGCTGCCCTTGTACCTGCTGCTTCAGAAGCTACCTGGAAGTCACTGGTTATAGAATCTAAATTACCCGTCCTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGAATGATTCATCCGATCATCGATGACCTATCTAAAGAATACGCTGGAAGGTTCAAATTTTACAAGGTGGATACTGATAACAACTCTTCGATTGCATCCCAATATGGTATCAGAAGCATACCTACTGTCATTATCTTCAAAGATGGTGAGAAGAAGGAGGCAATAATAGGTGCAGTTCCTAAAGCAACTTTGACAGCCAGCATGGAAAAATTCTTGTAG 534 47.19 MATVLDSLTLPCSSAFASTAFSGRRSSVALPQCRGLKIAHSFTSHSIRSTRSNARFPQRSATIVCEAQETAALVPAASEATWKSLVIESKLPVLVEFWAPWCGPCRMIHPIIDDLSKEYAGRFKFYKVDTDNNSSIASQYGIRSIPTVIIFKDGEKKEAIIGAVPKATLTASMEKFL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9693130 9695273 - Lsi05G007150.1 Lsi05g00715 663207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00715 177 Pfam Thioredoxin 77 174 IPR013766 -
Lsi05g00715 177 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Lsi05g00715 177 Gene3D Glutaredoxin 74 177 - -
Lsi05g00715 177 ProSiteProfiles Thioredoxin domain profile. 50 177 IPR013766 -
Lsi05g00715 177 PANTHER THIOREDOXIN-1-LIKE 12 177 - -
Lsi05g00715 177 CDD TRX_family 80 174 - -
Lsi05g00715 177 TIGRFAM thioredoxin: thioredoxin 78 176 IPR005746 GO:0015035
Lsi05g00715 177 PANTHER GEO12009P1 12 177 - -
Lsi05g00715 177 SUPERFAMILY Thioredoxin-like 72 177 IPR036249 -
Lsi05g00715 177 PRINTS Thioredoxin family signature 93 101 - -
Lsi05g00715 177 PRINTS Thioredoxin family signature 141 152 - -
Lsi05g00715 177 PRINTS Thioredoxin family signature 101 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00715 K03671 trxA; thioredoxin 1 - csv:101204508 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00498 Lsi-Chr3:5736104 Lsi05g00715 Lsi-Chr5:9693130 2.56E-30 dispersed
Lsi05g00715 Lsi-Chr5:9693130 Lsi08g00514 Lsi-Chr8:13066182 1.46E-44 dispersed
Lsi08g00923 Lsi-Chr8:17630763 Lsi05g00715 Lsi-Chr5:9693130 1.01E-09 dispersed
Lsi05g00715 Lsi-Chr5:9693130 Lsi01g00634 Lsi-Chr1:5114537 6.52E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00715 Lsi_Chr05 FPKM 16.707605 19.240421 24.722631 26.819706 33.001381 29.594547 32.110188 28.472069 26.653017 33.666737