Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00719 ATGTCTACAACAAAGCTTCTTCCCCACACCTTTGATCCAATCGATGAGAATCACGACAACGACCGCGAAATTGAGCCCTCTGAGAGGCTCGTCGGATCGCCGTTTACAGAGGATAGAGATTCTGTTTCCCTCACCCTAGGGGAGCCACTCTTGCGTACCAGTACGGCCAGGATCAGTACCACCTCCCAGCTCGCCATTGTTGGTTCTAATATATGTCCTATTGAGAGCCTCGACTACGAGATTATTGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAGCTCGAGATATTTCAGTATATCATCCTCAAATGGACGTTGTGCCTTTTCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTTCTCCTGACAAATAATCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTGCAGTATACGTTGCTTCCAATAGTGCTTTAGCTGCTGCTGCTGCAATCCTCTGTGGCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGCGTAGATGCTTATTCTATATTGGCTCCGAGTACCTTATTTGTGAAGATTTTTGGTTCGATATTTGCTGTTGCTGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCGTTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGCAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGCGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCTGTTGTCTTAAGGAGTTTCATTGAATTTTGCCGAGGGGGACAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGCACCCCAGATCTTATTGCAATTGTTTTACTAGGAGTTTTTGGCGGTGTACTTGGAAGCCTTTACAACTATCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGCACGAAACTTATCCTTGTTGTTGGCATTTCCATATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGTTCTCACAATGTTTACCGTGCCCAACTGACTTGGATGATCAATGCCCAACCATTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCATCTTTATTTTTCAATACCAATGATGATGCCATCCGAAGCCTGTTCACATCTGCTACTGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCAGGGGCCTCTTACGGTCGCATTGTAGGGAGATTATTTGGTTCAGCTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTGCCCTTTATGGAAGCCCACGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTTTCTGGGATCGAAAAGGTTGATAACATTGTCCACGCCTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCACCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAATTTACTAAGCAAAAGGCGTCACTTAGATCAGAAATTTGGAGGCGCTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACTTCAATGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCGCCCTACACAGTGGTAGAATCAATGTCGCTAGCTAAAGCGGCGATTCTCTTTCATGCACTTGGCTTGAGGCACTTGTTGGTGGTTCCGAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTTACACGGCACGACTTCATGCCGGAGCATGTTCTGGGACTTTACCCGCATCTCAACCCCCACAAGTAG 2370 45.02 MSTTKLLPHTFDPIDENHDNDREIEPSERLVGSPFTEDRDSVSLTLGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKLEIFQYIILKWTLCLFIGLITGLVGFFNNIAVENIAGHKLLLTNNLMLKEKYFQAFAVYVASNSALAAAAAILCGYIAPAAAGSGIPEVKAYLNGVDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFIEFCRGGQCGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVFGGVLGSLYNYLVDKVLRTYSIINERGPGTKLILVVGISILTTCVSFGLPWFSQCLPCPTDLDDQCPTIGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRSLFTSATDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSAATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKQKASLRSEIWRRFKAHDFAKAGSGKGVKLEDLDFNEEEMEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHVLGLYPHLNPHK 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9778960 9786323 - Lsi05G007190.1 Lsi05g00719 663211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00719 789 Gene3D - 622 760 IPR046342 -
Lsi05g00719 789 Pfam Voltage gated chloride channel 163 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 45 789 - -
Lsi05g00719 789 CDD ClC_6_like 75 596 - -
Lsi05g00719 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 45 789 - -
Lsi05g00719 789 ProSiteProfiles CBS domain profile. 723 786 IPR000644 -
Lsi05g00719 789 Gene3D Clc chloride channel 98 597 - -
Lsi05g00719 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 776 - -
Lsi05g00719 789 SUPERFAMILY CBS-domain pair 600 774 IPR046342 -
Lsi05g00719 789 PRINTS Chloride channel signature 545 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PRINTS Chloride channel signature 206 225 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PRINTS Chloride channel signature 175 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PRINTS Chloride channel signature 495 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PRINTS Chloride channel signature 270 289 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PRINTS Chloride channel signature 583 597 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 PRINTS Chloride channel signature 527 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi05g00719 789 SUPERFAMILY Clc chloride channel 84 598 IPR014743 -
Lsi05g00719 789 Pfam CBS domain 725 773 IPR000644 -
Lsi05g00719 789 MobiDBLite consensus disorder prediction 1 22 - -
Lsi05g00719 789 PRINTS Plant CLC chloride channel signature 291 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi05g00719 789 PRINTS Plant CLC chloride channel signature 323 330 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi05g00719 789 PRINTS Plant CLC chloride channel signature 305 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi05g00719 789 PRINTS Plant CLC chloride channel signature 80 88 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi05g00719 789 PRINTS Plant CLC chloride channel signature 447 463 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00391 Lsi-Chr3:4533518 Lsi05g00719 Lsi-Chr5:9778960 0 dispersed
Lsi03g00392 Lsi-Chr3:4536068 Lsi05g00719 Lsi-Chr5:9778960 9.83E-50 dispersed
Lsi05g00719 Lsi-Chr5:9778960 Lsi09g01334 Lsi-Chr9:21265832 0 dispersed
Lsi05g00719 Lsi-Chr5:9778960 Lsi11g00348 Lsi-Chr11:3654966 5.15E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00719 K05016 - csv:101209987 1385.16