Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00730 ATGGCTCTGGTCCTGCATTCTTGGAAGACTAACAAAAATGCTTACAAGGCTTTCATAGCTGCAGAATACAATGGTGTCAAACTTGACCTTTCCCCTGATTTTACAATGGGCGTAACCAATAAGAGTCCTGAATATCTCAAAATGAATCCTATTGGGAAGGTTCCTGTTCTGGAAACACCCGATGGTGCTATCTTTGAAAGCAATGCTATTGCCCGCTATGTTGCTCGCTTGAAGGACAGCGGCTTATTTGGCTCTTCTTCAATCGACTATGGACATGTTGAACAATGGATTGATTTCTCCACATTGGAAATTGATTCTCATCTTTCAACCATCCTGAGGCCTAGATTTGGATATGGTGTTTACCATGCTGCCGTAGAAGAAGCTGCAAATGCTGCCCTAAAACGATCTTTGGCTGCTTTGAACTCCTACCTTGCTTCAAACACATTCCTTGTTGGACATGCTGTGACTCTGGCTGATATCATTTTGACATGCAATCTTTATTTGGGATTCACCTACGTGTTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTCGAGAGGTACTTCTGGACATTGGTCAATCAACCAAATTTCCAAAAGATAATTGGTGAGGTAAAGCAGACAGATGTCGTTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCGGCCAAACCAAAGCCTGATCCCAAGAAACAAGTAGAGAAGCCCAAAGCAGCACCTGCTGAGGAAGAGGAGGCACCGAAGCCCAAGGCTAAAAATCCTCTCGACCTGCTTCCTCCTAGTACGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACGAAAACAAACTTCCGTGAGGTTGCCATCAAAGGATTCTGGGACATGTATGACCCTGAAGGGTACTCCCTTTGGTTCTGTGATTACAAGTACAACGACGAGAATACCGTTTCATTCGTGACTTTGAACAAAGTTGGCGGATTTCTCCAGAGAATGGATCTTGCTCGCAAGTATGCCTTTGGAAAGATGCTCGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGGAAAGACATCCCACAATTTGTGCTAGACGAGTGCTATGATATGGAGCTGTACGAGTGGAAGAAGGTCGATATCTCGGATGACGCCCAGAAGGAGAGGGTGAACCAAATGATTGAAGACCAGGAACCATTTGAGGGTGAAGCACTTTTGGATGCCAAATGCTTCAACGATTCAGCCTTTCAATTTGTTGCAAACCTTGCCAGAAACGGATTGTTACACACAGATATGAGTAGAAATTTGAGTCGCAGATCGTCAGATTTGGTGTCGTTTTCGGCTTCGCTTTCCCTACTTTTCGTCTCTGCCCTATCTGATGATTCCAGTAGCAAAGATAGTATTAAATCTGGGAATCATCCATCCTCCAGCAGCAACACTGGCTCGATGGTTGCCATAATCCTCTTTGGAATTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGTTATGGCAAAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAACTTGAGGTTGAACTTGGTCTTCGGGATTGA 1608 44.22 MALVLHSWKTNKNAYKAFIAAEYNGVKLDLSPDFTMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSGLFGSSSIDYGHVEQWIDFSTLEIDSHLSTILRPRFGYGVYHAAVEEAANAALKRSLAALNSYLASNTFLVGHAVTLADIILTCNLYLGFTYVLTKSFTSEFPHVERYFWTLVNQPNFQKIIGEVKQTDVVPPVKTPEEAAAAAKPKPDPKKQVEKPKAAPAEEEEAPKPKAKNPLDLLPPSTMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPYKVKGLWLFRGKDIPQFVLDECYDMELYEWKKVDISDDAQKERVNQMIEDQEPFEGEALLDAKCFNDSAFQFVANLARNGLLHTDMSRNLSRRSSDLVSFSASLSLLFVSALSDDSSSKDSIKSGNHPSSSSNTGSMVAIILFGILVVVLLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9954594 9963468 + Lsi05G007300.1 Lsi05g00730 663222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00730 535 SUPERFAMILY Thioredoxin-like 2 78 IPR036249 -
Lsi05g00730 535 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746|GO:0006414
Lsi05g00730 535 SFLD Main (cytGST) 4 189 - -
Lsi05g00730 535 SMART EF1G_2 251 359 IPR001662 GO:0003746|GO:0006414
Lsi05g00730 535 Pfam Glutathione S-transferase, C-terminal domain 123 196 IPR004046 -
Lsi05g00730 535 SUPERFAMILY GST C-terminal domain-like 73 210 IPR036282 -
Lsi05g00730 535 Gene3D Glutaredoxin 1 74 - -
Lsi05g00730 535 MobiDBLite consensus disorder prediction 218 259 - -
Lsi05g00730 535 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364
Lsi05g00730 535 CDD GST_C_EF1Bgamma_like 89 211 - -
Lsi05g00730 535 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
Lsi05g00730 535 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746|GO:0006414
Lsi05g00730 535 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Lsi05g00730 535 SUPERFAMILY eEF1-gamma domain 253 411 IPR036433 GO:0003746|GO:0006414
Lsi05g00730 535 MobiDBLite consensus disorder prediction 222 252 - -
Lsi05g00730 535 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746|GO:0006414
Lsi05g00730 535 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Lsi05g00730 535 CDD GST_N_EF1Bgamma 3 77 - -
Lsi05g00730 535 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Lsi05g00730 535 Gene3D - 79 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00730 Lsi-Chr5:9954594 Lsi11g00053 Lsi-Chr11:620467 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00730 K03233 - csv:101215571 719.153