Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00741 ATGTTTCACTCTCTTGAGTTGAGATTCACCCGTTTCAAAGAGAAATTATTGGATGAAACCAACAAAATGATGGTTGTCTGGTTACGATTCTGTCTTGGCGGGGAGGCAAAAATATCATGTGGGAGTGACATTATGGATGAGTTTGAGTTGAGGGCTAGAATGTACAGAGGGCAGTACAATCCTGAATTTCCTGGCTTCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTGAAACAAGGGTTTGAATTCTCTGACTCTGCTGCACTAAGCACTTGGACTGCCTCAAACTTCAGCTCAGTTTGTTCATGGGTTGGGATTCAGTGCTCTGACGGACGAGTTGTGTCGGTCGACTTGACAGATTTGAATCTTGGTGGCTCTGTTTCGCCATTGATTTCAAGTCTTGACCAACTTTCTGAGTTGTCTGTCGCAGGAAATAACTTCTCTGGTGGCATTGAAGTAGTGAATTTGAGTCATCTTCGATTCCTTAACATCTCAAACAACCAGTTCACTGGGACTCTGCAGTGGAACTTTTCGAGTCTGCCGAAGTTGGAGGTGTTGGATGCCTATAACAACAACTTCAGTGCTCTTCTCCCCACTGAGATTGTGAATTTACAGAACCTCAAATACTTGGACATTGGAGGTAACTTTTTCCATGGAAAAATCCCTGAAAACTATGGCAGTTTAGAAGGGTTGCAATATCTTTCTCTTGGAGGAAATGATTTGGTTGGGAAAATCCCAGGAGCGTTGGGAAATCTCACAAATTTGAGAGAAATTCACTTGGGCTATTACAATGTTTTCGAAGGGGGGATTCCACCCGAGCTAGGGAAGTTGGCCAATTTGGTTATCATGGAGATTGCAGACTGCAGTTTGGACGGGCAAATTCCTCATGAACTGGGAAATTTGAAGGCCTTGAACACTCTATATTTGCATACAAATCTACTCTCAGGTTCGATTCCGAAGCAGTTAGGCAATCTGACAAACATGGTCAATCTGGATCTCTCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGAGCTCAAACAGCTCAACCTTTACAACCTCTTCATGAACAAGCTGCACGGATCTATTCCAGACTACATAGCAGATTTGCCGAACTTGGAGACCTTGGACCTGTGGATGAACAACTTTACCGGCACAATCCCGAAGAATCTTGGCCAAAATGGGAGGCTTCAGCTCCTCGATTTGTCAACAAACAAGCTCACGGGTACAATACCTGAGGGTTTGTGTTCATCAAACCAGCTGAAAGTACTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGAGGGTCTGGGGACATGTACCAGTCTTACAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATTTAGCAGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAAAATAGGGAGAGTTCATCAATACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTGTCTTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATATTAGCAGAAACTCACTTTCAGGTGAAATTCCACCTGAAATTGGGAATTGTATCCATCTCACTTACCTTGATTTGAGCAGGAACAACCTCTCTGGCCCAATTCCCCCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGGCAATGAAGAGCCTGACGATTGCTGATTTCTCCTTCAACGATTTCTCCGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCATCCTTCGCCGGAAATCCTCAACTCTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACAACAACAAAACCGGGAAAAACTCCGACGTATTTCAAGCTAATCTTCGCGCTCGGCCTATTGATTTGCTCTCTAGTGTTCGCCATAGCGGCAGTAGTCAAAGCGAAATCATTCAAAAGAAACGGATCAAGTACATGGAAAATGACCTCATTCCAAAAGCTTGAATTCACCGTCTACGACGTCTTGGAGTGCGTGAAAGACGGCAACGTGATCGGAAGAGGTGGCGCCGGCATCGTCTACCACGGGAAAATGCCGAACGGAGTGGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGTCACGACCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATCGTCAGATTACTCGCATTCTGCTCCAATAAAGAGACAAACCTCCTGGTATATGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGAAAAAAAGCCTCGTTCCTCGGATGGAATTTGAGATACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCACCGAGACGTGAAATCAAACAACATTCTCTTGAATTCGAACTTCGAAGCTCACGTCGCCGATTTCGGATTGGCGAAGTTCATGCTCGACGGCGGCGCGTCGGAATGCATGTCGGTGATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCATACACATTGAGAGTCGACGAGAAAAGTGATGTGTATAGTTTTGGAGTTGTGCTATTAGAGCTTTTGACGGGGCGTCGACCAGTTGGAGATTTCGGGGACGGAGTAGTTGATATAGCACAATGGTGCAAACGAGCTCTAACAGATGGGGAGAATGAAAACGACATTATTTGCATAGTTGACAAAAGGATAGGAATGGTACCCAAAGAGGAAGCAAAACACTTATTCTTCGTAGCAATGTTATGTGTACAAGAGAACAGTGTGGAAAGACCAACGATGAGAGAAGTAGTTCAAATGTTGGCTGAGTTTCCTCACCAGTCTCCCAACTGTTACCAATCTTCCTCTTCTTCTTCTCCCTGTCAAAAAGTGAAGAATGGTGAAAAAGAAAGAGAACATCAGCCAAAGTCCAAAGCGGATCTTTTAGTTTAA 3156 44.58 MFHSLELRFTRFKEKLLDETNKMMVVWLRFCLGGEAKISCGSDIMDEFELRARMYRGQYNPEFPGFSSSHSLVSDFHVLLALKQGFEFSDSAALSTWTASNFSSVCSWVGIQCSDGRVVSVDLTDLNLGGSVSPLISSLDQLSELSVAGNNFSGGIEVVNLSHLRFLNISNNQFTGTLQWNFSSLPKLEVLDAYNNNFSALLPTEIVNLQNLKYLDIGGNFFHGKIPENYGSLEGLQYLSLGGNDLVGKIPGALGNLTNLREIHLGYYNVFEGGIPPELGKLANLVIMEIADCSLDGQIPHELGNLKALNTLYLHTNLLSGSIPKQLGNLTNMVNLDLSNNALTGEIPSEFVELKQLNLYNLFMNKLHGSIPDYIADLPNLETLDLWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPEGLCSSNQLKVLILMNNFLFGPIPEGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENRESSSIPIKLGQLNLSNNLLSGTLPSSLSNLSSLQILLLNGNQFSGTIPPSIGELNQLLKLDISRNSLSGEIPPEIGNCIHLTYLDLSRNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTTTKPGKTPTYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSTWKMTSFQKLEFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMLDGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCKRALTDGENENDIICIVDKRIGMVPKEEAKHLFFVAMLCVQENSVERPTMREVVQMLAEFPHQSPNCYQSSSSSSPCQKVKNGEKEREHQPKSKADLLV 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10246636 10252992 + Lsi05G007410.1 Lsi05g00741 663233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00741 1051 Pfam Leucine rich repeat 162 220 IPR001611 GO:0005515
Lsi05g00741 1051 SMART serkin_6 736 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00741 1051 SUPERFAMILY Protein kinase-like (PK-like) 719 1009 IPR011009 -
Lsi05g00741 1051 Gene3D Transferase(Phosphotransferase) domain 1 813 1033 - -
Lsi05g00741 1051 ProSiteProfiles Protein kinase domain profile. 736 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00741 1051 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 68 1018 - -
Lsi05g00741 1051 Pfam Protein tyrosine and serine/threonine kinase 739 1009 IPR001245 GO:0004672|GO:0006468
Lsi05g00741 1051 Pfam Leucine rich repeat N-terminal domain 74 114 IPR013210 -
Lsi05g00741 1051 Pfam Leucine Rich Repeat 575 596 IPR001611 GO:0005515
Lsi05g00741 1051 SUPERFAMILY L domain-like 404 660 - -
Lsi05g00741 1051 Gene3D Ribonuclease Inhibitor 404 675 IPR032675 -
Lsi05g00741 1051 PANTHER UNNAMED PRODUCT 68 1018 - -
Lsi05g00741 1051 SMART LRR_typ_2 161 184 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 403 426 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 233 257 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 330 354 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 525 549 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 185 208 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 378 402 IPR003591 -
Lsi05g00741 1051 SMART LRR_typ_2 573 597 IPR003591 -
Lsi05g00741 1051 MobiDBLite consensus disorder prediction 1017 1031 - -
Lsi05g00741 1051 MobiDBLite consensus disorder prediction 1017 1051 - -
Lsi05g00741 1051 SUPERFAMILY RNI-like 120 464 - -
Lsi05g00741 1051 Gene3D Ribonuclease Inhibitor 326 403 IPR032675 -
Lsi05g00741 1051 Gene3D Ribonuclease Inhibitor 73 226 IPR032675 -
Lsi05g00741 1051 Gene3D Ribonuclease Inhibitor 227 325 IPR032675 -
Lsi05g00741 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 857 869 IPR008271 GO:0004672|GO:0006468
Lsi05g00741 1051 MobiDBLite consensus disorder prediction 1032 1051 - -
Lsi05g00741 1051 Gene3D Phosphorylase Kinase; domain 1 700 812 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00741 Lsi-Chr5:10246636 Lsi05g00800 Lsi-Chr5:11817984 0 dispersed
Lsi05g00741 Lsi-Chr5:10246636 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83639 PF07714 PK_Tyr_Ser-Thr 4.00E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00741 - - csv:101215633 1823.52