Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00769 | ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCCAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGACCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTATGGCAACGATGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA | 738 | 48.64 | MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10818138 | 10825688 | - | Lsi05G007690.1 | Lsi05g00769 | 663261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00769 | 245 | PANTHER | CPG BINDING PROTEIN | 1 | 242 | IPR045104 | GO:0006355|GO:0042393 | |
| Lsi05g00769 | 245 | SUPERFAMILY | FYVE/PHD zinc finger | 180 | 242 | IPR011011 | - | |
| Lsi05g00769 | 245 | SMART | PHD_3 | 191 | 239 | IPR001965 | - | |
| Lsi05g00769 | 245 | MobiDBLite | consensus disorder prediction | 173 | 190 | - | - | |
| Lsi05g00769 | 245 | ProSiteProfiles | Zinc finger PHD-type profile. | 189 | 241 | IPR019787 | - | |
| Lsi05g00769 | 245 | ProSitePatterns | Zinc finger PHD-type signature. | 192 | 238 | IPR019786 | - | |
| Lsi05g00769 | 245 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 7 | 1 | 242 | - | - | |
| Lsi05g00769 | 245 | Pfam | PHD-finger | 192 | 241 | IPR019787 | - | |
| Lsi05g00769 | 245 | MobiDBLite | consensus disorder prediction | 130 | 161 | - | - | |
| Lsi05g00769 | 245 | CDD | PHD_AL_plant | 192 | 241 | IPR044104 | - | |
| Lsi05g00769 | 245 | Pfam | Alfin | 11 | 128 | IPR021998 | GO:0006355|GO:0042393 | |
| Lsi05g00769 | 245 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 240 | IPR013083 | - | |
| Lsi05g00769 | 245 | MobiDBLite | consensus disorder prediction | 130 | 191 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g02216 | Lsi-Chr3:33171653 | Lsi05g00769 | Lsi-Chr5:10818138 | 1.82E-82 | dispersed | |
| Lsi04g00981 | Lsi-Chr4:10489977 | Lsi05g00769 | Lsi-Chr5:10818138 | 2.03E-37 | dispersed | |
| Lsi05g00769 | Lsi-Chr5:10818138 | Lsi11g00171 | Lsi-Chr11:1805696 | 2.23E-06 | dispersed | |
| Lsi05g00769 | Lsi-Chr5:10818138 | Lsi02g02913 | Lsi-Chr2:35346170 | 3.20E-100 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25326 | PF12165 | Alfin | 1.80E-54 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00769 | - | - | csv:101212601 | 447.973 |