Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00769 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCCAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGACCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGCAGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGTGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTATGGCAACGATGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 738 48.64 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10818138 10825688 - Lsi05G007690.1 Lsi05g00769 663261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00769 245 PANTHER CPG BINDING PROTEIN 1 242 IPR045104 GO:0006355|GO:0042393
Lsi05g00769 245 SUPERFAMILY FYVE/PHD zinc finger 180 242 IPR011011 -
Lsi05g00769 245 SMART PHD_3 191 239 IPR001965 -
Lsi05g00769 245 MobiDBLite consensus disorder prediction 173 190 - -
Lsi05g00769 245 ProSiteProfiles Zinc finger PHD-type profile. 189 241 IPR019787 -
Lsi05g00769 245 ProSitePatterns Zinc finger PHD-type signature. 192 238 IPR019786 -
Lsi05g00769 245 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 242 - -
Lsi05g00769 245 Pfam PHD-finger 192 241 IPR019787 -
Lsi05g00769 245 MobiDBLite consensus disorder prediction 130 161 - -
Lsi05g00769 245 CDD PHD_AL_plant 192 241 IPR044104 -
Lsi05g00769 245 Pfam Alfin 11 128 IPR021998 GO:0006355|GO:0042393
Lsi05g00769 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 240 IPR013083 -
Lsi05g00769 245 MobiDBLite consensus disorder prediction 130 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00769 - - - csv:101212601 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02216 Lsi-Chr3:33171653 Lsi05g00769 Lsi-Chr5:10818138 1.82E-82 dispersed
Lsi04g00981 Lsi-Chr4:10489977 Lsi05g00769 Lsi-Chr5:10818138 2.03E-37 dispersed
Lsi05g00769 Lsi-Chr5:10818138 Lsi11g00171 Lsi-Chr11:1805696 2.23E-06 dispersed
Lsi05g00769 Lsi-Chr5:10818138 Lsi02g02913 Lsi-Chr2:35346170 3.20E-100 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00769 . 1 242 Alfin-like Transcription Factor Family AT1G14510 80.2 7.9e-104 373.6
Lsi03g02216 . 14 243 Alfin-like Transcription Factor Family AT1G14510 58.2 5.7e-78 287.7
Lsi02g02913 . 107 311 Alfin-like Transcription Factor Family AT1G14510 66.5 5.3e-76 281.2
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT1G14510 68.6 8.3e-45 177.6
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G26210 71.4 2.6e-86 315.5
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G26210 66.4 1.2e-80 296.6
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT5G26210 58.1 4.0e-79 291.6
Lsi04g00981 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.4e-45 177.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G26210 64.4 1.6e-43 173.3
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G26210 58.3 6.9e-39 157.9
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT3G42790 68.0 1.4e-81 299.7
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT3G42790 58.3 6.7e-79 290.8
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT3G42790 63.8 2.1e-77 285.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT3G42790 67.2 2.6e-43 172.6
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT3G42790 61.2 1.5e-38 156.8
Lsi03g02216 . 7 246 Alfin-like Transcription Factor Family AT5G05610 73.4 9.8e-104 373.2
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G05610 65.9 2.3e-76 282.3
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G05610 59.7 8.7e-76 280.4
Lsi04g00981 . 1 123 Alfin-like Transcription Factor Family AT5G05610 77.2 2.7e-53 205.7
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT5G05610 76.0 4.6e-53 204.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G05610 60.2 1.7e-39 159.8
Lsi11g00171 . 253 397 Alfin-like Transcription Factor Family AT5G05610 51.7 5.5e-38 154.8
Lsi03g02216 . 49 246 Alfin-like Transcription Factor Family AT3G11200 75.2 4.4e-85 311.2
Lsi02g02913 . 104 313 Alfin-like Transcription Factor Family AT3G11200 65.3 2.1e-74 275.8
Lsi05g00769 . 33 244 Alfin-like Transcription Factor Family AT3G11200 63.4 4.5e-69 258.1
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT3G11200 73.2 1.2e-50 196.8
Lsi04g00981 . 43 135 Alfin-like Transcription Factor Family AT3G11200 80.6 6.3e-39 157.9
Lsi05g00769 . 1 150 Alfin-like Transcription Factor Family AT2G02470 80.1 2.4e-68 255.8
Lsi03g02216 . 14 173 Alfin-like Transcription Factor Family AT2G02470 63.6 3.8e-53 205.3
Lsi02g02913 . 107 223 Alfin-like Transcription Factor Family AT2G02470 78.6 8.1e-48 187.6
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT2G02470 69.5 1.9e-44 176.4
Lsi05g00769 . 3 157 Alfin-like Transcription Factor Family AT5G20510 67.9 3.8e-58 221.5
Lsi02g02913 . 107 225 Alfin-like Transcription Factor Family AT5G20510 79.3 5.8e-51 197.6
Lsi03g02216 . 13 163 Alfin-like Transcription Factor Family AT5G20510 61.8 1.0e-50 196.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT5G20510 66.4 1.5e-43 172.9
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G20510 57.9 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25326 PF12165 Alfin 1.80E-54 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00769 Lsi_Chr05 FPKM 16.049227 18.249956 19.303068 20.414545 29.724798 27.208054 27.851894 24.147093 25.348785 22.60553