Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00774 ATGGCGACCAACAATGAGAAACAGCCAGTTTGTGTGACCGGAGCCAATGGATTCATCGGATCCTGGGTCGTCCGTACGCTTTTGGAGTCTGGCTACACAACAATACATACCTCCATCTTCCCCGGCTCTGATTCTTCCCATTTGTTCAATCTCCAGGCCTCCACTAACCCTAGTGCTAATCTTAGGGTTTTCGAAGCGAACGTAATGGATCGCGAGGCGGTGGCCAGAGCTGTGGAAGGCTGCAAGGGAGTATTTCACATCGCCTCCCCCTGCACATTGGAGGATCCGATTGATCCGCAGAAAGAATTGGTGGAGCCGGCGGTGCAAGGCACTGTCAATGTTCTTAATGCTGCGAAGAAGTTCGGAGTGAAACGCGTTGTTCTTACTTCTTCTATTTCGGCTCTTGTCCCTAACCCCGGTTGGCCGTCTGATATGCCTATCGATGAATCTTCATGGACGGACATAGAGTACTGCAAATCGCACAAGAAATGGTATCCAGTCTCAAAAACATTGGCAGAGAAATCAGCATGGGAATTTGCAGAGAATCATGGACTGGATGTTGTTTCCATCCTGCCAGCCACATGTCTTGGTCCTCTTCTGCAACCTAATTTGAATGCAAGTTGTGCTGTATTGCAGCAGTTACTCCAGGGATCCCAGGATAGTCAGGAATATCACTGGTTGGGTGCTGTTCATGTCAAAGACATTGCTAAAGCACAAATTTTATTATTTGAGTCTCCCACTGCTTCTGGTAGATATCTTTGCACCAATGGTATCTATCAATTTTCCGATTTTGCAGACCTAGTCTCGAAAATATGCCCTCAATTTCCAGTTCACAGATTCGTAGGAGAAACACAGCCCGGGTTGGTTGCCTGCAAAGATGCAGCCATGAGGTTAATTGATTTGGGACTTGTTTTCACCCCTCTTGAAGTTGCCATTGAAGATACGCTTGAGAGTCTTAGAAGCAAAGGCTTTTTGGATCAATGA 984 46.85 MATNNEKQPVCVTGANGFIGSWVVRTLLESGYTTIHTSIFPGSDSSHLFNLQASTNPSANLRVFEANVMDREAVARAVEGCKGVFHIASPCTLEDPIDPQKELVEPAVQGTVNVLNAAKKFGVKRVVLTSSISALVPNPGWPSDMPIDESSWTDIEYCKSHKKWYPVSKTLAEKSAWEFAENHGLDVVSILPATCLGPLLQPNLNASCAVLQQLLQGSQDSQEYHWLGAVHVKDIAKAQILLFESPTASGRYLCTNGIYQFSDFADLVSKICPQFPVHRFVGETQPGLVACKDAAMRLIDLGLVFTPLEVAIEDTLESLRSKGFLDQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11002724 11006633 + Lsi05G007740.1 Lsi05g00774 663266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00774 327 CDD FR_SDR_e 10 303 - -
Lsi05g00774 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 320 IPR036291 -
Lsi05g00774 327 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 313 - -
Lsi05g00774 327 Gene3D - 1 327 - -
Lsi05g00774 327 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 313 - -
Lsi05g00774 327 Pfam NAD dependent epimerase/dehydratase family 10 248 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01234 Lsi-Chr2:16202906 Lsi05g00774 Lsi-Chr5:11002724 4.89E-106 dispersed
Lsi04g02425 Lsi-Chr4:31351954 Lsi05g00774 Lsi-Chr5:11002724 2.51E-19 dispersed
Lsi05g00774 Lsi-Chr5:11002724 Lsi10g01070 Lsi-Chr10:14926398 5.63E-24 dispersed
Lsi05g00774 Lsi-Chr5:11002724 Lsi03g01266 Lsi-Chr3:23357447 3.01E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00774 - - cmo:103493282 609.757