Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00779 ATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATCTGGGACCGTGGAGAAACTATTTTCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATCCGGCTGCTGAATGTAGCCAGTCCATCGTCTCTTTTATTTCAGAAGAACACTTGGAGCACTCATTTACTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATACAATGTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCATTGGATCCCCCTAGGATGAAGGCTGGTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTCGTTGTCCTCCTCCAGTGGTTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAGAAGTCGGACGTATAATATCATGACCTTGTATCTTCAACCATTATTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGTTGTCCACTGTACTCGCCTTTGCATATTGCTTATCTAGGCACCATTTGATTATCGTTTCCACGTTCTTGTTTGATGCAATTTATCACAAGCATAGAAGTTATAGCTTAGACATGGCTAGTGGCATCCAATATCTTGTTTATATCAGTATCAGAAAGAAATTGTTCCAACAGATGGGCTTTCAATTTGCTTGGAAAGCTGTCTACTCTGCAGTGTGGGTTGCTGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGTTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCACTTCACATACCAAACCATAAGTTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAATAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTAGATCCTGAAAATCAGGCACTTTTGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAGTGCAGAAGATGCATAGTGATTCAGACATGGACAGTGTTCCGTTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACTGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCAGCTAAAGAGACAACACCATCTGATAGGAAGACAGAAATCAAGACTGGAGGAGATGTTGATACAAAAAAACATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAGTTGAAACATAAATCATCATCAAGGTCTGCTGCAAGTACCTCTGATATGCCAGCTTCTGTTCCCAAAACAACTAAATCAGAAGCTGATAATTCATTGGAAGATTCCAGTCCCAAGCAATCTGAAAATAGCTCGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCCTCCTGCTGTTTCGTTTCCAGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCCGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCAATAACGAAGCCTGGCGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCTATTGAGGACGACGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCAAATGGAGCAACAACGCCAGATAAGAATACAAAACGTCAATCTCCTTCTCCTACCACATCTTCTAGTGAATAG 2202 42.55 MVLVGSLQLSYHLGPWRNYFHEENLKFTSQSYNIRLLNVASPSSLLFQKNTWSTHLLSMKYPPNYIVPSRYNVLRCQSSLMTNQPLDPPRMKAGIVALTRFCNVLGRCPPPVVKLVPAVCIIMFAVWGLGPFLRYTRSLFHNDNNWKRSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSRHHLIIVSTFLFDAIYHKHRSYSLDMASGIQYLVYISIRKKLFQQMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREALHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLEAIILDLLRVIRHHRARLATPIRTVQKMHSDSDMDSVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETTPSDRKTEIKTGGDVDTKKHPKVSMSTSEDKSSNELKHKSSSRSAASTSDMPASVPKTTKSEADNSLEDSSPKQSENSSGSNKQNFKPSPPAVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSITKPGVEENIILGVALDGSKRTLPIEDDVPTASGAKDLAACRNGNSANGATTPDKNTKRQSPSPTTSSSE 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11119660 11128504 - Lsi05G007790.1 Lsi05g00779 663271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00779 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 254 724 - -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 642 667 - -
Lsi05g00779 733 Gene3D - 322 377 IPR023408 -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 707 733 - -
Lsi05g00779 733 SUPERFAMILY Sm-like ribonucleoproteins 306 376 IPR010920 -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 513 534 - -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 499 669 - -
Lsi05g00779 733 Pfam Mechanosensitive ion channel 264 424 IPR006685 GO:0016020|GO:0055085
Lsi05g00779 733 MobiDBLite consensus disorder prediction 682 733 - -
Lsi05g00779 733 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 254 724 IPR045042 -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 535 575 - -
Lsi05g00779 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 210 - -
Lsi05g00779 733 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 210 IPR045042 -
Lsi05g00779 733 Gene3D - 232 320 - -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 576 598 - -
Lsi05g00779 733 MobiDBLite consensus disorder prediction 607 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00779 Lsi-Chr5:11119660 Lsi08g01024 Lsi-Chr8:18805650 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00779 K22047 - csv:101217250 1175.61