Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00782 ATGGCTCCTGCCACTAACTGGCTTTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCTACTGATTCTCCCTTTCTTCCTTATGATTCTTCATCCTCCCCCTCCCCTCACTATCTCCTTCCTGACAATTTCTACTCTCATAATGGATGGAGTAGCAACAATGCTAATTCTCACCCAAAATCATCTCAACTTTTCTTCATGGATGGAGATGAAAACAACGAAGCTGTCAAAGAAGACCAAACAACAACAACAACAACAACACCCACCATTTTTAGTACTTTTCTTCATCCACAAACCCAACATCATCATCATCATCATCATCATCATCATCAGCAACCCAAGCTTGAAGATTTCCTGGGAGATTCCTCTCCTATGGTGCGATATTCAGACAGTCAAACCGAGACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCCTCCGCCTCTTACTTTGGAGATCAACAAGATCTCAAAACCATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGGTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACCCATATCCCCTCTGCTCATTCTATTGACTCTTCTTCACTCACTAATAATGACTTACCCTCTTTCTCTACCGGTGCTCTCTCACTCGCCGTCGCTCACTCCTCCGACACCGCAGCTGCTGCTGCTGCTGCTGCGCCTATTCTGCCTGTAGATTCTGATTCATCTAAGAAAATTGCTGATACTTTTGGTCAGAGAACTTCCATTTACAGAGGAGTTACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGCCCCACAGCAACAACCAATTTTCCTGTTTCGAATTATGCCAAGGAATTAGAAGAAATGAAACATGTCACCAAACAAGAGTTTATTGCTTCTTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCTTCTATTTATAGAGGTGTAACAAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGTCGTGTAGCTGGGAACAAGGACTTGTATCTCGGGACGTTTGCTACCGAAGAAGAAGCAGCCGAGGCTTATGATATAGCAGCAATCAAGTTCAGAGGTTTGAATGCCGTGACGAACTTCGAGATGAGTCGATATGATGTGGAAGCTATTGCGAAAAGTGCACTACCTATTGGGGGAGCCGCAAAGAGGCTGAAGCTTTGCCTGGAATCCGATCAGAAGCCTATTCCGATTCATGATCAAGTAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTCGGCACCACCATGCAAGCCGTGCCACCGATCCCTTGCGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAACACCATCGGTTCATCGGAGTCGACCAGCCCAGGCATTGCAACACCGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAATCGTATTAG 1584 46.02 MAPATNWLSFSLSPIEMLRSTDSPFLPYDSSSSPSPHYLLPDNFYSHNGWSSNNANSHPKSSQLFFMDGDENNEAVKEDQTTTTTTTPTIFSTFLHPQTQHHHHHHHHHHQQPKLEDFLGDSSPMVRYSDSQTETQDSSLTHIYDHASASYFGDQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIDSSSLTNNDLPSFSTGALSLAVAHSSDTAAAAAAAAPILPVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPIHDQVTQCSSGSNNINFGTTMQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNTIGSSESTSPGIATPGTVAPQAAEFFVWPHQSY 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11240033 11244609 - Lsi05G007820.1 Lsi05g00782 663274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00782 527 Pfam AP2 domain 350 400 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 Pfam AP2 domain 251 306 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 PRINTS Ethylene responsive element binding protein signature 390 410 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 MobiDBLite consensus disorder prediction 97 121 - -
Lsi05g00782 527 CDD AP2 349 410 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 ProSiteProfiles AP2/ERF domain profile. 350 408 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 SUPERFAMILY DNA-binding domain 250 316 IPR016177 GO:0003677
Lsi05g00782 527 ProSiteProfiles AP2/ERF domain profile. 251 314 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 506 - -
Lsi05g00782 527 Gene3D AP2/ERF domain 350 410 IPR036955 GO:0003700|GO:0006355
Lsi05g00782 527 Gene3D AP2/ERF domain 251 316 IPR036955 GO:0003700|GO:0006355
Lsi05g00782 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 506 - -
Lsi05g00782 527 CDD AP2 250 316 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 SMART rav1_2 350 414 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 SMART rav1_2 251 320 IPR001471 GO:0003700|GO:0006355
Lsi05g00782 527 SUPERFAMILY DNA-binding domain 349 410 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00782 Lsi-Chr5:11240033 Lsi10g01048 Lsi-Chr10:14712752 5.10E-120 dispersed
Lsi05g00782 Lsi-Chr5:11240033 Lsi01g00869 Lsi-Chr1:7000981 1.08E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25328 PF00847 AP2 2.00E-09 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00782 K09285 - csv:101217714 845.499