Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00790 ATGTTCCCATGGATAGCTATGGGTCATTTAATCCCTTACTTAGAGTTCGCTAAACTCATCGCCAAACAAGGTTACCATGTTTTCTTCGTTTCCACCCCTCGAAACATCCAAAGGCTCCCCAAAATCCACCCTCCTCATTTGCTTCCTTTTATCACCTTCAATCCCATGGCTGAGTTTCTTAACTCCTCTGCTCCCCATTGGATCCTCCATGACTTCGCTTCTTACTGGCTCTCCCCCATTGCACTCCAACTTGGTGTCAAGATCGGGTACTTGAGCACTTTAAACCCAGAATTCCATGGATTCATGGGGCCAGTTTCAGCAATGAATGGTGGAGAAGGCAGCCACAAGACGCTGGAGGATTATATTGTCACTCCGAAATGGATCCCTTTTCCCACAACAGTGTCCTTTCCATACTTCGATGTCAAGAAAATATTTGACAAATTATCTCAGAACACCACCAACGACGGCGTCTCTGATATCCACCGATTCGCCAACGTGATACAAAACTCTGACGACGAAACAGAGACATGGAAATTCATCAGAAACTGGTTGGATAATAAAAAAAGGGGGTCGGTGATTTACGTGGCATTTGGAACGGAGGCGAAGCCGACGGAGTCGGAAGTTATAGAGATAGCACTGGGGTTAGAAGAATCGGGCTTTGAAGACTGGGCTTTGAAGACTCAACGGGGAGCGACAGATGAAAAGGAAATTCAGTTGCCAGAAGGGTTCGAGGAGCGAATTAAAGGACGTGGGGTTGTTTTCAGGAACTGGGTTCCTCAGTTGAAGATTTTGGGGCATGAATCGGTGGGGGGTTTTGTTTCACACAGTGGTTGGAGCTCGGTGGTGGAGGGGATTAAGTACGGGAAATCTCTGGTTCTGTTGAGTTTCTTTGGAGATCAAAGGTTGAATGTGAAGTTTCTTGAGGAGAGGAAAATTGGGTATCCGATTCCGAGGAGGGAAAGTAATGGGTGGTTTACGAGAAAGTCGGTGGCAGAGTCGATGAGGCTAGTGATGAGTAGAGACAATGAAAGCCAAAGTCAAACACGGATCTTTCGTCAAAAGAAGGAAGATGTAGAGACATATCCCGAGACAGACCTGCGCACCTGGATTGAGAGAAAATGCGATAGTACCAGGGAAGGGACTGGGACCGAGGCCTAG 1158 47.06 MFPWIAMGHLIPYLEFAKLIAKQGYHVFFVSTPRNIQRLPKIHPPHLLPFITFNPMAEFLNSSAPHWILHDFASYWLSPIALQLGVKIGYLSTLNPEFHGFMGPVSAMNGGEGSHKTLEDYIVTPKWIPFPTTVSFPYFDVKKIFDKLSQNTTNDGVSDIHRFANVIQNSDDETETWKFIRNWLDNKKRGSVIYVAFGTEAKPTESEVIEIALGLEESGFEDWALKTQRGATDEKEIQLPEGFEERIKGRGVVFRNWVPQLKILGHESVGGFVSHSGWSSVVEGIKYGKSLVLLSFFGDQRLNVKFLEERKIGYPIPRRESNGWFTRKSVAESMRLVMSRDNESQSQTRIFRQKKEDVETYPETDLRTWIERKCDSTREGTGTEA 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11452183 11457551 + Lsi05G007900.1 Lsi05g00790 663282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00790 385 Gene3D Glycogen Phosphorylase B; 171 351 - -
Lsi05g00790 385 PANTHER GLYCOSYLTRANSFERASE 1 53 - -
Lsi05g00790 385 PANTHER GLYCOSYLTRANSFERASE 170 358 - -
Lsi05g00790 385 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 191 310 IPR002213 GO:0008194
Lsi05g00790 385 CDD GT1_Gtf-like 1 339 IPR002213 GO:0008194
Lsi05g00790 385 Gene3D Glycogen Phosphorylase B; 1 66 - -
Lsi05g00790 385 PANTHER UDP-GLYCOSYLTRANSFERASE 91A1-LIKE 170 358 - -
Lsi05g00790 385 PANTHER UDP-GLYCOSYLTRANSFERASE 91A1-LIKE 1 53 - -
Lsi05g00790 385 PANTHER UDP-GLYCOSYLTRANSFERASE 91A1-LIKE 54 171 - -
Lsi05g00790 385 PANTHER GLYCOSYLTRANSFERASE 54 171 - -
Lsi05g00790 385 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00790 - - - mcha:111008360 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01507 Lsi-Chr2:20983634 Lsi05g00790 Lsi-Chr5:11452183 2.08E-06 dispersed
Lsi05g00790 Lsi-Chr5:11452183 Lsi05g02056 Lsi-Chr5:27495335 1.49E-47 dispersed
Lsi05g00789 Lsi-Chr5:11438788 Lsi05g00790 Lsi-Chr5:11452183 9.51E-98 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00555 . . . . . . . . . . . . . . . . . . . Lsi05g00790 . Chy06g01167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000348 3 5 4 9 3 2 1 4 3 5 2 2 3 4 3 3 3 9 1 4 7 7 4 5 5 6 6 6 4 1 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00790 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0