Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00793 ATGGCTGGGGGAGGAATGATCCGGCAATTGCTGAGGAAATTTCCATCTCAATCTTCAACCCCTCCGTTGACTTCATCCCTTATTTCAAAGAATCAGGAAGCTGGCTTTGCTGGGATGAACTCCTTTAGAAGGCTTGCTCTCCTTGGAGCAGGCATTTCAGGGTTTTTCAGTTTTGCAACTTTGGCATCTGCTGATGAGGCAGAACATGGTTTGGAGTGTCCAAACTACCCCTGGCCTCACCAGGGCATTTTGAGTTCATACGATCATGCTTCGATTCGTCGTGGTCATCAGGTTTACCAACAAGTTTGTGCATCTTGTCATTCCATGTCTTTAATATCATACCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACAAAAGCAATGGCTGCTGAAATTGAGGTAGTTGATGGACCCAATGATGAGGGTGAGATGTTCACTCGCCCAGGTAAACTCAGTGACCGGTTTCCTGAACCATATGCAAACGAACAAGCTGCTAGATTTGCTAATGGTGGAGCATACCCTCCTGATCTGAGCCTTATCACAAAAGCTCGTCATAATGGTCAGAATTACGTATTTGCCCTTCTTACTGGTTATCGTGATCCACCTGCTGGTGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGGGGAGCAATTGCAATGCCTAAGATGCTTAATGATGGAGCTGTTGAGTACGAAGATGGTACCCCTGCCACAGAAGCACAGATGGGGAAAGATGTTGTATCTTTCTTGTCATGGGCTGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGGTTCAAATGGATCTTTGTGCTCTCTCTGGCTCTACTTCAGGCCGCATATTACCGCCGATTGAAGTGGTCAGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTAGTCAATTAG 924 46.21 MAGGGMIRQLLRKFPSQSSTPPLTSSLISKNQEAGFAGMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPNYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11551315 11557910 + Lsi05G007930.1 Lsi05g00793 663285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00793 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Lsi05g00793 307 PANTHER CYTOCHROME C1 26 307 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 26 307 - -
Lsi05g00793 307 Gene3D - 263 306 - -
Lsi05g00793 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Lsi05g00793 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Lsi05g00793 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00793 Lsi-Chr5:11551315 Lsi07g00169 Lsi-Chr7:1797266 9.21E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00793 K00413 - csv:101215010 606.675