Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00796 ATGGCCATCTCCAACTCAACCCCCTTCTTTCTTGGAGCTCATAATAGAAACCACCATTTCCAATCCCAAGCTCTTCAATTCTTCATCTTCTCTTTAATTATCTGCAAAGTTCACTCACTTTCCTTCTCCTTCCCCAACTTCCAACAAAACAATCCCAACTTATTCTTTGAAGGTGATAGCTTCACCAGCAATGGTGTTATTCAACTCACAAAGAACCAAGCCGACGGCCCGCTCACCGAGAGCTCCGGCCGAGCTTCTTACGCACAGCCCGTGCGCCTATGGGACGCCTCCACGGGACGGGTTACAGATTTCACCACCCATTTCTCCTTTAGAATCAACACACTTAACGAATCTTTATTTGGTGATGGAATCGCCTTCTTCATAGTCCCTTATGAATCCACAATCCCCACTAACTCAACAGGGGGATTTCTTGGATTATTCAGCTCGGATTCTGCTTTTGATCCCTCCAAGAATCAAGTTTTTGGAGTTGAATTTGACAGTAAGCAAGATGATTGGGATTCAAGTGATAATCATATAGGAATCAATGTCAATTCGATTCGATCCATTGATTATCTTGTGTGGAACACTAGCATGAAGGACAACAGAACAGCAAATGCGTGGATAACTTACAATTCCGCCACAAACAACTTGTCTGTGTTTCTAACTTACGTTAGAGATCCAATTTTTAATGGAACTTTCAGCACCACAACTTTCGTTGACTTAAAAAGTTTATTGCCTGAAAGGGTCAGAATTGGATTCTCCGCAGCCACAGGGAAATGGTTTCAAATACACAACATAATTTCTTGGTCTTTCAACTCAACGTTAGACGATAATATTGGTGGTGGAGGAGGCAAAAATAAAAATATTGGTTTGGCAATTGGGCTAGGTGTTGGCCTTGGTGTTTTGATATGTGGGTTGAGTTTATTGGGATTTGTTTGGTGGAGTAAACAATCGAGTAGGAGAATGGAAGAGGATGTGGATGATTCTATAGATGATGAATTTGAGAAAGGAACAGGCCCAAAAAGGTTTACTTATAGGGAATTAACTCAAGCAACAAAGAATTTTGATGAGGCTGGGAAGTTGGGAGAAGGAGGATTTGGAGGTGTTTACAAGGGATTATTAACGGAATCCAATACAGAAATAGCTGTGAAGAGGGTTTCAAGAGGATCAAGACAGGGAAAAAAAGAGTATATTTCTGAAGTGAAGATCATTAGTCGATTAAGACATAGGAATCTTGTTCAACTCTTTGGTTGGTGCCATGAAAAAGGTGAGTTTCTTTTGGTTTATGAGTTCATGCCCAATGGTAGCTTGGATACTCACTTGTTTAGAGGTAAAACAATGTTAAGTTGGCCAGTTAGATACAAAATAGCAATAGGATTGGCTTCTTCTTTGCTATATCTTCATGAAGAATGGGAACAATGTGTGGTGCATAGAGATATCAAGTCCAGCAATGTAATGCTGGACTCGAATTTCAATGCTAAGCTCGGCGATTTCGGCCTTGCGAGGTTTGTAGACCATGAGCTCGGCTCGCAAACGACGGTTCTGGCTGGTACCATGGGGTATCTAGCACCGGAGTGTGTGACAGATGGCAAGGCTAGTAAGGAATCAGATGTTTACAGTTTTGGAGTAGTGGCTCTTGAAATTGCCTGCGGGCGGCGGCCGGTGGAGTCGAGGGCTGAACCAGATCAGGTGAGGCTTGTAGAGTGGGTGTGGGAGATGTATGGCAGAGGACAAGCCTTGGAAACTGCAGACAAGAGATTGGGAATGGAGTTTGATGAGCAGCAAATGGAAGCTTTGATAGTGGTGGGACTATGGTGCTGCCACCCTGACTTCAAGTTGCGGCCCTCCATAAGACAGGTGATTAATGCTCTGAACTTTGAAGCTTCACTGCCCGCGCTGCCCGCAAAGTTGCCCGTGCCGATGTACTTTGCACCACCGATGAATATATGCAAGTTCTCCTACACAACGACGGGCACGCCGGTGGATAGAAGTCAGTGTTCGTGTAGTAACTGCTCGACTTTCACCACGCAATCTTCAGGATCAGGATCAAGTGTGTCGCTTTTGAAATCACAAAGACATGATTAA 2085 43.74 MAISNSTPFFLGAHNRNHHFQSQALQFFIFSLIICKVHSLSFSFPNFQQNNPNLFFEGDSFTSNGVIQLTKNQADGPLTESSGRASYAQPVRLWDASTGRVTDFTTHFSFRINTLNESLFGDGIAFFIVPYESTIPTNSTGGFLGLFSSDSAFDPSKNQVFGVEFDSKQDDWDSSDNHIGINVNSIRSIDYLVWNTSMKDNRTANAWITYNSATNNLSVFLTYVRDPIFNGTFSTTTFVDLKSLLPERVRIGFSAATGKWFQIHNIISWSFNSTLDDNIGGGGGKNKNIGLAIGLGVGLGVLICGLSLLGFVWWSKQSSRRMEEDVDDSIDDEFEKGTGPKRFTYRELTQATKNFDEAGKLGEGGFGGVYKGLLTESNTEIAVKRVSRGSRQGKKEYISEVKIISRLRHRNLVQLFGWCHEKGEFLLVYEFMPNGSLDTHLFRGKTMLSWPVRYKIAIGLASSLLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKLGDFGLARFVDHELGSQTTVLAGTMGYLAPECVTDGKASKESDVYSFGVVALEIACGRRPVESRAEPDQVRLVEWVWEMYGRGQALETADKRLGMEFDEQQMEALIVVGLWCCHPDFKLRPSIRQVINALNFEASLPALPAKLPVPMYFAPPMNICKFSYTTTGTPVDRSQCSCSNCSTFTTQSSGSGSSVSLLKSQRHD 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11636923 11639446 - Lsi05G007960.1 Lsi05g00796 663288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00796 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Lsi05g00796 694 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00796 694 CDD STKc_IRAK 369 625 - -
Lsi05g00796 694 CDD lectin_legume_LecRK_Arcelin_ConA 40 275 IPR001220 GO:0030246
Lsi05g00796 694 PANTHER - 24 688 - -
Lsi05g00796 694 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00796 694 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 275 IPR013320 -
Lsi05g00796 694 Gene3D - 37 280 - -
Lsi05g00796 694 ProSitePatterns Legume lectins alpha-chain signature. 245 254 IPR000985 -
Lsi05g00796 694 PANTHER RECEPTOR LECTIN KINASE 24 688 - -
Lsi05g00796 694 SUPERFAMILY Protein kinase-like (PK-like) 339 649 IPR011009 -
Lsi05g00796 694 Pfam Legume lectin domain 39 276 IPR001220 GO:0030246
Lsi05g00796 694 SMART serkin_6 355 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00796 694 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Lsi05g00796 694 Gene3D Transferase(Phosphotransferase) domain 1 432 645 - -
Lsi05g00796 694 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00796 - - - bhj:120090639 1207.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00681 Lsi-Chr3:8641436 Lsi05g00796 Lsi-Chr5:11636923 4.02E-165 dispersed
Lsi03g00683 Lsi-Chr3:8669570 Lsi05g00796 Lsi-Chr5:11636923 0 dispersed
Lsi03g00689 Lsi-Chr3:8919212 Lsi05g00796 Lsi-Chr5:11636923 0 dispersed
Lsi05g00796 Lsi-Chr5:11636923 Lsi10g00272 Lsi-Chr10:4344517 0 dispersed
Lsi11g01317 Lsi-Chr11:21799520 Lsi05g00796 Lsi-Chr5:11636923 2.13E-132 dispersed
Lsi05g00796 Lsi-Chr5:11636923 Lsi05g00799 Lsi-Chr5:11694208 2.76E-136 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83641 PF00069 Pkinase 1.80E-50 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00796 Lsi_Chr05 FPKM 6.577135 6.83874 11.160806 12.22755 7.069074 7.28704 6.346442 8.911617 8.173834 8.715133