Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00800 ATGCAGCTTCTTCTGCTTCTCTTTCTTCTTCTCCATCTCCATCTCCATCTCCATCTCTCCCTTTCTTCTCACTTGCCTGAATATCGTGCTCTTCTCTCTCTCAAGACCTCGTTTTCCGATGACTCCCAATCGCCGCTCTCCACTTGGGACGCCGCTACTGTCCATTGTACTTGGACCGGAGTCACCTGCGATTTCCGTCGCCACGTCGTCGGCCTCGACCTTGCAGGATTGAATCTCTCTGGTACTCTCTCTCCTGACCTGGCCTCTCTTCGCTTTCTCTCTAATCTCTCTCTCGCGTCCAATCAGATTTCCGGTCCCATTCCGTCGGAGATCTCTGCTATCTCTACGCTTAAATACCTTAACCTCTCTAACAATCTCATTAATGGCACATTCCCCTTGCAACTCTCCTTGCTCAACAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATCCAGTTGCCGAATCTCCGCCATTTGCATCTTGGGGGGAACTTCTTCTCCGGCGTCATTCCGCCGGGGTATGGAAGGTGGCAGTTCATGGAGTACTTGGCGGTGTCTGGAAATGAGCTTCAAGGTCCGGTTCCGCCGGAGATTGGTAATCTGACGAAGCTGCGTGAACTTTACATTGGGTATTATAATACCTACGACGGCGGTTTGCCGCCGGAAATTGGAAACTTATCGGAACTGGTTCGATTGGATGCTGCTAACTGTGGGTTAACGGGTGAGATCCCTCGCGAACTTGGAAAACTTAAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAACTTGGGAGCTTAACGGGATTGAAATCCATGGATTTGTCTAACAACATTCTTGTTGGTGAGATTCCGGACTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGCTAGAAGTTTTGCAGTTGTGGGAAAATAACTTCACTGGCTCTATTCCTTATAGTTTGGGGAAGAATGGGAAGCTTGTTGTTCTCGACATTTCGTCGAACAAGCTGACTGGAACTTTACCTCCCGATATGTGCAATGGAAATAGACTTCAAACTCTGATAACCCTCGGCAATTTCTTGTTTGGTCCAATCCCTGAATCTCTCGGTAGATGCGAGTCGTTAAGCCGTATTCGCATGGGGGAGAATTTTCTCAATGGTTCGATCCCAAACGGTCTCTTCGGTTTGCCAAATCTTTCCCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCGGCAAATCTCGGACAAATTAGTCTCTCAAACAATCGGCTCTCGGGGCCCCTTCCACCCATGGTTGGAAATTTCTCCGGCGTCCAGAAGCTTCTACTCGATGGGAACAAGTTCTCCGGCCAAATCCCACCTGAAATCGGGCGGTTACAGCAGCTCTCAAAGATTGATTTCAGCCACAACAAATTCTCCGGTCCAATCGCTCCAGAGATTAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGTAACGAACTCTCCGGTGAGATTCCGAATGAAATCACCACAATGAGGATATTGAACTATCTGAATCTCTCAAGAAATCATTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATATAACAATCTCTCTGGTTTAGTTCCGGGCACCGGCCAGTTTAGCTACTTCAACTACACTTCATTTCTAGGCAACCCAGATCTCTGCGGTCCATACTTAGGACCTTGCAAAAATGGGGTCGGCAATGGCACTCAGCAGCCTCATTTAAAACCCTCACTCTCTTCTTCTGTGAAGCTTCTGCTTGTCATCGTCTTGCTGGTCTGCTCGATCGCATTTGCAATCGCAGCAATCATCAAAGCTCGGTCGCTAAAACGAGCGAGTGGGTCTCGAGCTTGGAAATTAACCGCATTCCAAAGACTAGATTTCACAGCGGATGACATTTTGGACTGTTTGAAAGAGGACAACATTATTGGGAAAGGAGGCGCTGGGATTGTTTACAAAGGTTTTATGCCAAGTGGCGATAACGTCGCCGTGAAAAGACTGCCGGCAATGGGCCGAGGGTCGTCCCATGACCATGGATTCAATGCTGAGATACAGACTTTGGGGAGGATTAAACATCGTCACATTGTTCGATTATTGGGTTTCTGTTCAAACCATGAAACCAATCTTCTGGTTTATGAATATATGCCTAATGGGAGTTTAGGGGAAGTTCTACACGGGAAGAAAGGTGGGCATTTGCAGTGGGACACAAGGTATAAAATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTACATCATGACTGTTCCCCATTGATTGTTCATCGAGACGTAAAATCAAACAATATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCCTATACATTGAGAGTGGACGAGAAGAGCGACGTTTATAGTTTCGGAGTAGTACTGTTAGAATTGGTGAGTGGGCGAAAGCCCGTTGGAGAATTCGGCGATGGGGTCGACATAGTTCAGTGGGTTAGAAAAATGACCAGTCCCAACAATGAAGGGGTAGTAAAAATCATCGATCCACGGCTCTCCTCGGTCCCGCTGAATGAAGTAACTCATGTATTCTACGTAGCGATGCTATGCGTGGAAGATCAGGCCGTGGAGAGGCCAACAATGAGAGAAGTAGTTCAAATCCTCACAGAACTCCCAAGGCCACCAACTTCAAAACAAGTAGACTCAAAAGAAGGCGAAGTAACAACCCCGCCGCTGCCACCATCGTCCCCGGCAGTGGCATTAGATTCACCAAACAAAACACAGCCACCACCTGATCTTCTGAGCATTTGA 3033 46.75 MQLLLLLFLLLHLHLHLHLSLSSHLPEYRALLSLKTSFSDDSQSPLSTWDAATVHCTWTGVTCDFRRHVVGLDLAGLNLSGTLSPDLASLRFLSNLSLASNQISGPIPSEISAISTLKYLNLSNNLINGTFPLQLSLLNNLEVLDLYNNNMSGNLPLVVIQLPNLRHLHLGGNFFSGVIPPGYGRWQFMEYLAVSGNELQGPVPPEIGNLTKLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLKKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPDSFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCNGNRLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPNGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGPLPPMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKNGVGNGTQQPHLKPSLSSSVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTADDILDCLKEDNIIGKGGAGIVYKGFMPSGDNVAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVVKIIDPRLSSVPLNEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPRPPTSKQVDSKEGEVTTPPLPPSSPAVALDSPNKTQPPPDLLSI 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11817984 11822021 - Lsi05G008000.1 Lsi05g00800 663292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00800 1010 MobiDBLite consensus disorder prediction 994 1010 - -
Lsi05g00800 1010 SUPERFAMILY L domain-like 300 617 - -
Lsi05g00800 1010 SUPERFAMILY Protein kinase-like (PK-like) 687 962 IPR011009 -
Lsi05g00800 1010 SMART LRR_typ_2 356 379 IPR003591 -
Lsi05g00800 1010 SMART LRR_typ_2 331 355 IPR003591 -
Lsi05g00800 1010 SMART LRR_typ_2 499 523 IPR003591 -
Lsi05g00800 1010 SMART LRR_typ_2 571 594 IPR003591 -
Lsi05g00800 1010 SMART LRR_typ_2 162 186 IPR003591 -
Lsi05g00800 1010 SMART LRR_typ_2 283 307 IPR003591 -
Lsi05g00800 1010 Gene3D Transferase(Phosphotransferase) domain 1 769 981 - -
Lsi05g00800 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 977 - -
Lsi05g00800 1010 Pfam Leucine Rich Repeat 164 181 IPR001611 GO:0005515
Lsi05g00800 1010 Pfam Leucine Rich Repeat 286 307 IPR001611 GO:0005515
Lsi05g00800 1010 Gene3D Ribonuclease Inhibitor 89 346 IPR032675 -
Lsi05g00800 1010 Gene3D Ribonuclease Inhibitor 21 88 IPR032675 -
Lsi05g00800 1010 ProSiteProfiles Protein kinase domain profile. 691 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00800 1010 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Lsi05g00800 1010 MobiDBLite consensus disorder prediction 966 1010 - -
Lsi05g00800 1010 SMART serkin_6 691 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00800 1010 Pfam Protein tyrosine and serine/threonine kinase 693 962 IPR001245 GO:0004672|GO:0006468
Lsi05g00800 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Lsi05g00800 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 977 - -
Lsi05g00800 1010 Gene3D Phosphorylase Kinase; domain 1 659 768 - -
Lsi05g00800 1010 Gene3D Ribonuclease Inhibitor 347 620 IPR032675 -
Lsi05g00800 1010 SUPERFAMILY RNI-like 71 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00848 Lsi-Chr1:6811617 Lsi05g00800 Lsi-Chr5:11817984 0 dispersed
Lsi01g01918 Lsi-Chr1:23716845 Lsi05g00800 Lsi-Chr5:11817984 1.52E-142 dispersed
Lsi04g01757 Lsi-Chr4:24821483 Lsi05g00800 Lsi-Chr5:11817984 0 dispersed
Lsi05g00741 Lsi-Chr5:10246636 Lsi05g00800 Lsi-Chr5:11817984 0 dispersed
Lsi05g00800 Lsi-Chr5:11817984 Lsi05g01053 Lsi-Chr5:18048728 0 dispersed
Lsi04g01947 Lsi-Chr4:26581660 Lsi05g00800 Lsi-Chr5:11817984 3.19E-18 transposed
Lsi05g00855 Lsi-Chr5:14265405 Lsi05g00800 Lsi-Chr5:11817984 1.76E-160 transposed
Lsi11g00378 Lsi-Chr11:3882467 Lsi05g00800 Lsi-Chr5:11817984 1.05E-159 transposed
Lsi01g00847 Lsi-Chr1:6791970 Lsi05g00800 Lsi-Chr5:11817984 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83643 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00800 - - cic:CICLE_v10024796mg 1606.65