Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00804 ATGCCATTTCTGAAGCTTCCCCCATCTTCCTCCTTCCTTCTTTTCATCTTCTTCTTCTTACAGGTCTCTGCTTTTGCTCTCTTCTCCAACCACGATTATGATATTCTGATTCGGATTAAAAATACCCATTTCGATGATCCCAATGGTTGTTTCAACAATTGGGTCTCCACCCAAGCTCACAACCCTTGTAATTGGACTGGTATCACCTGCGATTCCACTAATTCCTCTGTTGTTTCCATCGATCTCAGTGATTCCGGTGTCGCCGGCGGATTTCCCTTCGATTTTTGCCGGATTTCCTCTCTGAAATCCCTTTCTATCTCCAACAGCTTCGTCAATGGAACTTTACTCTCCCCTTCTTTCTCTCTCTGTTCTCACTTGCAACTCCTCAATCTTTCCAATAACTTACTCGTCGGCAACTTGCCCGACTTTTCCTCTGCTTTCATACAACTCCAAATTCTCGATCTCTCTTCCAACAATTTCACTGGTGAAATTCCTCACAGCTTCGGACAGTTACAGGCGCTGAGAGTGCTTCGTTTGTCGCAGAATCTGCTCGACGGCCCAATACCTTCTGTTCTGGGAAATCTCACTGAGCTAACTGAAATGGCCATCGGTTATAATGATAATTTCAAACCCAGTCGGTTACCGTCTGAAATCGGAAACCTCAAGAAACTTGTAAACATGTTTTTACCCTCTTCGAATTTCATTGGACCCATTCCTGATTCCTTCGGAAACCTTGCTTCGCTTACTAATCTCGATTTATCTACTAATTCGATTTCGGGTCCGATCCCGGATTCAATCGGCGGACTAAGGAGCATAAAGAAGATTCAACTCTATAACAACCGAATCTCCGGTAAGTTGCCGGAGAGCATCGGAAATTTGAATACTCTGGTTTCGCTGGACATCTCGCAGAATAGTCTCACCGGGAAGTTGCCGGAGAAAATTGCTGCTCTCCCTCTTGAATTTCTGCATCTCAATGATAATTTCCTCGAAGGTGACGTCCCGGAGAGCTTAGCTTCTAACCCAAATCTTTTAAATTTGAAACTGTTTAACAATAGCTTTTCCGGCGAACTTCCCCGGAACTTGGGTCTGAATTCTTATTTGAATGAGATTGATGTCTCTACCAACAATTTCGTGGGCGAAATTCCGAAATTTCTCTGCCATGGAAACCAACTTCAGAAAATCGTTTTATTCAACAACCGTTTCTCTGGAAATTTCCCAGAATCGTACGGTGGTTGCGAGTCTCTGTGTTATGTCAGAATCGAGAACAATCAACTTTCTGGGAAGGTACCGGACTCGTTCTGGAATCTCTCTACGCTTACTAATATTCGGCTGTCGGAAAATCAATTTCAGGGCTCCATTCCGCCGGCGATAAGTGGCGCTCGTTATCTCGAAGATTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTACCGAAGGAGATTTGCAAATTGCGAGAGCTCGTCCGGTTAGACGTCAGCAGGAATAAATTCTCCGGCGTAGTTCCTTCCTGTATAACAGAGTTGCAGCATCTTCAAAAGCTCGACATGCAAGAAAACATGTTCGCCGGAGAAATACCCAAATCGGTAAACACATGGAAAGAACTAACCGAGTTGAATCTGTCCCACAATCAATTCAGCGGTGAGATTCCGCCTCAACTCGGCGATTTACCAGTTCTAAAGTACTTGGATCTCTCTTCAAATTTACTCTCCGGCGAAATCCCCGAGGAATTAACGAAGCTGAAACTTGGTCAGTTCAACTTCTCCGACAACAAATTAACCGGAAAAGTTCCTTCCGGCTTCGACAACGAACTATTCATCAGTAGCTTAATGGGTAATCCGGGTCTGTGTAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCCAAACCCAGATCCATAAGTTTTTATGTCGTTATTGTTCTGTCGCTTATCGCTTTGGTTCTCATCGGCTCTCTCATTTGGGTAATCAGATTCAAGATGAATTTCTTCAAGAAATCGAAATCTCCATGGACGGTGACCAAGTTCCAACGTGTTGGGTTCGATGAAGAAGATGTAATTCCTTGTCTAACCAAAGCAAATGTTATAGGATCTGGCGGGTCGGGCACCGTCTTCAAAGTGGAATTGAAAATGGGTCAGACCGTCGCCGTGAAGAGTCTATGGGGTGGCCACAACAAAATGGATACAGAATCAGTTTTCCAGTCAGAAGTCGAGACATTGGGTCGGATTCGCCATGCCAATATTGTGAAGTTGCTCTTCAGTTGCAGCAATGGGGAAGGAAGTAGAATTCTTGTGTACGAGTACATGGAGAATGGTAGTTTGGGAGATATTCTACACGAACACAAATCCCAAGCTTTGTCTGATTGGTCGAAACGATTCAACATCGCTCTCGGAGCAGCCCAAGGATTAGCTTACTTACACCATGACTGCGTCCCTCCAATAATCCATCGCGACGTGAAGAGCAACAACATTCTCTTGGATGGAGAATTTCAACCTCGGGTGGCTGACTTCGGTTTGGCAAAGACAATGCAGCGCCAAGCAGAGGTAGACGATGACAATGTCATGTCTCGCATTGCTGGGTCCTACGGTTACATTGCCCCTGAGTATGGATATACTATGAAGGTAACAGAGAAGAGCGACGTGTATAGCTTTGGAGTGGTGTTGATGGAGCTAGTGACAGGGAAACGACCGAACGATGTGTGTTTTGGAGAGAACAAAGATATAGTGAAATGGGTGACAGTGGCTGCTTTGTCAGAGGGAGAAGAAGAGAAAGGTTTGAGTTTGGATGAGATTATTGATGAAAAGTTGGATCCAAGAACATGTGAAGTAGAAGAGATAGTGAAGATATTGGATGTGGCAGTGCTTTGTACCTCTTCTTTGCCTCTCAATAGACCTTCTATGAGAAGAGTGGTTGAGCTCATAAAGGACACCAAATTGCCTCATTCCAAGTCATGA 2949 44.76 MPFLKLPPSSSFLLFIFFFLQVSAFALFSNHDYDILIRIKNTHFDDPNGCFNNWVSTQAHNPCNWTGITCDSTNSSVVSIDLSDSGVAGGFPFDFCRISSLKSLSISNSFVNGTLLSPSFSLCSHLQLLNLSNNLLVGNLPDFSSAFIQLQILDLSSNNFTGEIPHSFGQLQALRVLRLSQNLLDGPIPSVLGNLTELTEMAIGYNDNFKPSRLPSEIGNLKKLVNMFLPSSNFIGPIPDSFGNLASLTNLDLSTNSISGPIPDSIGGLRSIKKIQLYNNRISGKLPESIGNLNTLVSLDISQNSLTGKLPEKIAALPLEFLHLNDNFLEGDVPESLASNPNLLNLKLFNNSFSGELPRNLGLNSYLNEIDVSTNNFVGEIPKFLCHGNQLQKIVLFNNRFSGNFPESYGGCESLCYVRIENNQLSGKVPDSFWNLSTLTNIRLSENQFQGSIPPAISGARYLEDLLISGNNFSGQLPKEICKLRELVRLDVSRNKFSGVVPSCITELQHLQKLDMQENMFAGEIPKSVNTWKELTELNLSHNQFSGEIPPQLGDLPVLKYLDLSSNLLSGEIPEELTKLKLGQFNFSDNKLTGKVPSGFDNELFISSLMGNPGLCSPDLKPLNRCPKPRSISFYVVIVLSLIALVLIGSLIWVIRFKMNFFKKSKSPWTVTKFQRVGFDEEDVIPCLTKANVIGSGGSGTVFKVELKMGQTVAVKSLWGGHNKMDTESVFQSEVETLGRIRHANIVKLLFSCSNGEGSRILVYEYMENGSLGDILHEHKSQALSDWSKRFNIALGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFQPRVADFGLAKTMQRQAEVDDDNVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDVCFGENKDIVKWVTVAALSEGEEEKGLSLDEIIDEKLDPRTCEVEEIVKILDVAVLCTSSLPLNRPSMRRVVELIKDTKLPHSKS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11931475 11934913 + Lsi05G008040.1 Lsi05g00804 663296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00804 982 SUPERFAMILY L domain-like 380 622 - -
Lsi05g00804 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 16 977 - -
Lsi05g00804 982 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Lsi05g00804 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Lsi05g00804 982 Gene3D Phosphorylase Kinase; domain 1 668 766 - -
Lsi05g00804 982 ProSiteProfiles Protein kinase domain profile. 688 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00804 982 SUPERFAMILY RNI-like 75 387 - -
Lsi05g00804 982 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Lsi05g00804 982 Gene3D Ribonuclease Inhibitor 210 318 IPR032675 -
Lsi05g00804 982 Pfam Protein kinase domain 690 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00804 982 Gene3D Ribonuclease Inhibitor 29 209 IPR032675 -
Lsi05g00804 982 Gene3D Ribonuclease Inhibitor 319 632 IPR032675 -
Lsi05g00804 982 SMART LRR_typ_2 171 195 IPR003591 -
Lsi05g00804 982 SMART LRR_typ_2 147 170 IPR003591 -
Lsi05g00804 982 SMART LRR_typ_2 484 507 IPR003591 -
Lsi05g00804 982 SMART LRR_typ_2 556 580 IPR003591 -
Lsi05g00804 982 SMART LRR_typ_2 436 460 IPR003591 -
Lsi05g00804 982 SMART LRR_typ_2 245 269 IPR003591 -
Lsi05g00804 982 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 977 - -
Lsi05g00804 982 SUPERFAMILY Protein kinase-like (PK-like) 683 971 IPR011009 -
Lsi05g00804 982 SMART serkin_6 688 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00804 982 ProSitePatterns Protein kinases ATP-binding region signature. 694 716 IPR017441 GO:0005524
Lsi05g00804 982 Pfam Leucine rich repeat 247 306 IPR001611 GO:0005515
Lsi05g00804 982 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
Lsi05g00804 982 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00804 Lsi-Chr5:11931475 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi05g00804 Lsi-Chr5:11931475 Lsi02g00781 Lsi-Chr2:7205457 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83644 PF00069 Pkinase 5.10E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00804 - - csv:101219140 1603.96