Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00806 ATGGCTGCCAATTTCGCCATGCTTAAACATTGTTCCTCATTTTCGACCTCCTCATCCCTTCAGAGGAAATTCCGTGCGCATAAATCACTATGCACTGCCCCATCTTCCTCTTTTTATCCACAATGTCAAGGAGGAGCTTATGGTTTATGCGTTGTTAAATGTGCTTCTTCAAATGGGAAGGGGCCTGATTCGTTGGATAATGGAGTTAAAAAAGTGGAGAGGTTACTTGAAGAGAAACGGCGAGCAGAATTGTCTGCTCGGATCGCTTCTGGCGAATTTACTGTCGAAAAAACTGGTTTTCCATCTGTATTGAGGAGTGGTTTGTCAAAGATTGGTGTTCCCAGTGAGATTCTGGATTTACTATTTGGTTTCGTCAATGCTCAAGAAGAATATCCCAAGATTCCTGAAGCTAAAGGATCATTAAATGCAGTTCGTAGTGAGGCCTTCTTCATACCTCTGTATGAGCTTTATCTCACGTATGGTGGAATATTTAGATTGACTTTTGGGCCAAAGTCGTTCTTGATAGTGTCTGATCCTTCAATTGCTAAACATATACTGAAAGATAATCCAAAGAACTATTCTAAGGGTATCTTAGCTGAAATTCTCGACTTTGTCATGGGGAAGGGGCTTATACCAGCTGATGGGGAGATATGGCGTGTACGAAGACGGGCTATAGTCCCTTCGTTGCATATGAAGTATGTAGGAGCTATGATTAATCTTTTTGGAGAAGCTGCAGATAGGCTTTGCAAGAAGCTAGATGCTGCAGCATCTGATGGAGTAGATGTGGAAATGGAGTCCCTCTTTTCCCGTCTGACTTTAGATATCATTGGCAAGGCAGTTTTTAACTATGACTTTGATTCACTTACAAACGACGCTGGCATAGTTGAGGTAGTTCAGTTTTCTGTAATGCTTATATTCCATTTCGAGCAGGCTGTTTATACTGTTCTAAGAGAAGCAGAAGATCGCAGCGTTGCGCCAATTCCAGTATGGGAAATTCCAATTTGGAAGGATATTTCACCACGGCAAAAAAAGGTCTCTAAAGCCCTCAAATTGATCAATGGCACTCTCGATCAACTAATTGCTATATGCAAGGTTTCGAGCAAGCAGCTTCGTGATGACTTGATGACTATGCTTATAGCTGGGCATGAAACATCTGCTGCAGTCTTAACATGGACATTTTATCTTCTTTCAAAGGTTGATTCTGTCCTCGGGGATCGTTTTCCAACAATTGAAGATATGAAGAACCTCAAATATGCCACACGAATAATTAATGAATCCTTGAGGCTTTACCCACAGCCCCCAGTTTTAATACGTCGATCTCTTGATAACGATATGCTCGGGAAGTACCCCATAAAGAAGGGTGAGGATATATTCATATCTGTTTGGAACTTGCATCGCAGTCCAGAACTTTGGGATGATGCAGACAAATTTAATCCTGAAAGGTGGCCCTTGGATGGACCCAATCCTAATGAGACAAATCAAAATTTCAGATATTTGCCTTTTGGTGGTGGACCAAGGAAATGTGTGGGAGACATATTTGCTTCATATGAGACTGTCGTAGCACTTGCCATGCTTGTTCGGCGATTTGACTTCCAAATAGCACTTGGAGCACCTCCAGTAAAAATGACAACAGGAGCTACAATTCACACAACAGATGGATTGCAAATGACAGTTACACGAAGAATGAAACCTCCAATCGTACCCACTTTAGACCCTGCAATGGTCGTTGATTCATCTGTCAGTTTCTTAAAAGATGAAACACAAATTGTTCAAGAAGGAGAAGTTTCTTCTGCGCATTCCTAA 1803 41.6 MAANFAMLKHCSSFSTSSSLQRKFRAHKSLCTAPSSSFYPQCQGGAYGLCVVKCASSNGKGPDSLDNGVKKVERLLEEKRRAELSARIASGEFTVEKTGFPSVLRSGLSKIGVPSEILDLLFGFVNAQEEYPKIPEAKGSLNAVRSEAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILKDNPKNYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPSLHMKYVGAMINLFGEAADRLCKKLDAAASDGVDVEMESLFSRLTLDIIGKAVFNYDFDSLTNDAGIVEVVQFSVMLIFHFEQAVYTVLREAEDRSVAPIPVWEIPIWKDISPRQKKVSKALKLINGTLDQLIAICKVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKVDSVLGDRFPTIEDMKNLKYATRIINESLRLYPQPPVLIRRSLDNDMLGKYPIKKGEDIFISVWNLHRSPELWDDADKFNPERWPLDGPNPNETNQNFRYLPFGGGPRKCVGDIFASYETVVALAMLVRRFDFQIALGAPPVKMTTGATIHTTDGLQMTVTRRMKPPIVPTLDPAMVVDSSVSFLKDETQIVQEGEVSSAHS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11988067 11995884 - Lsi05G008060.1 Lsi05g00806 663298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00806 600 PRINTS E-class P450 group I signature 508 531 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS E-class P450 group I signature 420 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS E-class P450 group I signature 498 508 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS E-class P450 group I signature 157 176 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS E-class P450 group I signature 460 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS E-class P450 group I signature 369 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 SUPERFAMILY Cytochrome P450 149 561 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 501 510 IPR017972 GO:0005506|GO:0016705
Lsi05g00806 600 PANTHER CYTOCHROME P450 FAMILY 4 365 565 - -
Lsi05g00806 600 PANTHER CYTOCHROME P450 FAMILY 4 86 364 - -
Lsi05g00806 600 Pfam Cytochrome P450 153 545 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS P450 superfamily signature 421 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS P450 superfamily signature 380 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS P450 superfamily signature 508 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PRINTS P450 superfamily signature 499 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00806 600 PANTHER - 365 565 - -
Lsi05g00806 600 PANTHER - 86 364 - -
Lsi05g00806 600 Gene3D Cytochrome P450 132 567 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01277 Lsi-Chr1:11033086 Lsi05g00806 Lsi-Chr5:11988067 3.49E-121 dispersed
Lsi05g00806 Lsi-Chr5:11988067 Lsi07g00790 Lsi-Chr7:8703121 4.46E-121 dispersed
Lsi05g00806 Lsi-Chr5:11988067 Lsi11g00296 Lsi-Chr11:3063954 6.30E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00806 K15747 - csv:101215492 1039.64