Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00810 ATGGGTTTTGATGATTTTTCTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAAAAGCCTGCACCTTGCTTCTCTAGTTCACTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCGGCGGCACTCACCAGAAAGTTATTGATGTTAACAACAAGATGATGATGATTAATAACAACAACTCCGATGTGGGTGTTCATCATTTGTATCGCCAAGAAGCTAATTCCCCTCATAGCAGCGCTGTTTGTTCTTCTTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTCAGCAGTGAAGAAGTTGAATTGGACAGAGTTTCTTCCAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAATCCGCTCTATTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAGGCAAAAACAGGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACAAAACTTAAACAAACAGAAGTAGACTGTGAGTTGTTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGACTACAAAAGGAGCTTCAAGAATTGAAGGCGCTAAAGCTGGCACAACCGCTATACATGCAGATGCCGGCGGCGACATTAACCATATGCCCCTCCTGCGAAAGGGTCGGCGGTGGCGTCGGCGGCGACGGTGCTTCCAAACCCAAATTTTCAATGGCTCCTAAGCCTCACTTTTACAACCCTTTCTCCAATCCTTCCGCCGCATGTTAG 834 44.96 MGFDDFSQTGLVLGLGLSNDQRLKKKPAPCFSSSLDFEPCALTLGFSGGGTHQKVIDVNNKMMMINNNNSDVGVHHLYRQEANSPHSSAVCSSFSGGGRVKRERDLSSEEVELDRVSSRVSDEDEDGSNARKKLRLSKQQSALLEQSFKQNSTLNPRQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKALKLAQPLYMQMPAATLTICPSCERVGGGVGGDGASKPKFSMAPKPHFYNPFSNPSAAC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12236738 12238763 - Lsi05G008100.1 Lsi05g00810 663302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00810 277 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
Lsi05g00810 277 MobiDBLite consensus disorder prediction 86 135 - -
Lsi05g00810 277 PANTHER - 6 277 - -
Lsi05g00810 277 MobiDBLite consensus disorder prediction 98 133 - -
Lsi05g00810 277 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Lsi05g00810 277 SUPERFAMILY Homeodomain-like 119 188 IPR009057 -
Lsi05g00810 277 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Lsi05g00810 277 SMART HOX_1 129 191 IPR001356 GO:0003677
Lsi05g00810 277 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Lsi05g00810 277 Coils Coil 193 223 - -
Lsi05g00810 277 Gene3D - 135 185 - -
Lsi05g00810 277 CDD homeodomain 131 188 IPR001356 GO:0003677
Lsi05g00810 277 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Lsi05g00810 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 6 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01446 Lsi-Chr4:22211213 Lsi05g00810 Lsi-Chr5:12236738 2.53E-70 dispersed
Lsi05g00810 Lsi-Chr5:12236738 Lsi07g01279 Lsi-Chr7:18633125 3.49E-67 dispersed
Lsi01g00857 Lsi-Chr1:6862407 Lsi05g00810 Lsi-Chr5:12236738 3.77E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25330 PF00046 Homeodomain 1.50E-15 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00810 K09338 - csv:101205848 393.66