Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00825 | ATGGAGTTGGAGGATCACGAAGAAGAAGACATGGAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACACACTTTCCCGGTTCATCAAAAACCCATCTCCGGTCCACTCGAATCGCCCTCACCTTCCCTCCAACCCCATCATCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCATCGGCGGCCACGCCCTCGATGGCTGCGGCGAGTTCATGCCCGGCGGTCCCCACGGCTCTCTTGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAAGACATCACCGACGACGACGGCCGCGACGGAGAATCAGGGTCGCAGTACACTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCGCCATCGTCGGGACGGAAGCGGTTGAGGACAAAGTTCACGGAGGAGCAGAAGGAGAAGATGGCGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGAAATTCTGCAATGAAATCGGCGTGAAGCGACGAGTGCTGAAGGTTTGGATGCATAACAACAAGAACACTTTTCGTAAAGAATCCAAACTAAACTAA | 609 | 53.69 | MELEDHEEEDMEIVEPPSNYINKIHTLSRFIKNPSPVHSNRPHLPSNPIIYNYKECLKNHAVAIGGHALDGCGEFMPGGPHGSLDALKCAACNCHRNFHRKDITDDDGRDGESGSQYTSYWRAPRMLALPSPSSGRKRLRTKFTEEQKEKMAEMAEKMEWRIQKKDEAAVMKFCNEIGVKRRVLKVWMHNNKNTFRKESKLN | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 13154551 | 13155159 | + | Lsi05G008250.1 | Lsi05g00825 | 663317 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00825 | 202 | SUPERFAMILY | Homeodomain-like | 129 | 197 | IPR009057 | - | |
| Lsi05g00825 | 202 | Pfam | ZF-HD protein dimerisation region | 52 | 103 | IPR006456 | - | |
| Lsi05g00825 | 202 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 52 | 102 | IPR006456 | - | |
| Lsi05g00825 | 202 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 53 | 102 | IPR006456 | - | |
| Lsi05g00825 | 202 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 136 | 193 | IPR006455 | - | |
| Lsi05g00825 | 202 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 38 | 107 | - | - | |
| Lsi05g00825 | 202 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 131 | 196 | - | - | |
| Lsi05g00825 | 202 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 38 | 107 | - | - | |
| Lsi05g00825 | 202 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 131 | 196 | - | - | |
| Lsi05g00825 | 202 | Gene3D | - | 128 | 197 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g00825 | Lsi-Chr5:13154551 | Lsi07g00255 | Lsi-Chr7:2801115 | 2.34E-47 | dispersed | |
| Lsi05g00825 | Lsi-Chr5:13154551 | Lsi08g01003 | Lsi-Chr8:18507811 | 1.61E-56 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25332 | PF04770 | ZF-HD_dimer | 3.10E-28 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00825 | - | - | cpep:111809080 | 257.299 |