Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00825 ATGGAGTTGGAGGATCACGAAGAAGAAGACATGGAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACACACTTTCCCGGTTCATCAAAAACCCATCTCCGGTCCACTCGAATCGCCCTCACCTTCCCTCCAACCCCATCATCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCATCGGCGGCCACGCCCTCGATGGCTGCGGCGAGTTCATGCCCGGCGGTCCCCACGGCTCTCTTGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAAGACATCACCGACGACGACGGCCGCGACGGAGAATCAGGGTCGCAGTACACTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCGCCATCGTCGGGACGGAAGCGGTTGAGGACAAAGTTCACGGAGGAGCAGAAGGAGAAGATGGCGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGAAATTCTGCAATGAAATCGGCGTGAAGCGACGAGTGCTGAAGGTTTGGATGCATAACAACAAGAACACTTTTCGTAAAGAATCCAAACTAAACTAA 609 53.69 MELEDHEEEDMEIVEPPSNYINKIHTLSRFIKNPSPVHSNRPHLPSNPIIYNYKECLKNHAVAIGGHALDGCGEFMPGGPHGSLDALKCAACNCHRNFHRKDITDDDGRDGESGSQYTSYWRAPRMLALPSPSSGRKRLRTKFTEEQKEKMAEMAEKMEWRIQKKDEAAVMKFCNEIGVKRRVLKVWMHNNKNTFRKESKLN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13154551 13155159 + Lsi05G008250.1 Lsi05g00825 663317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00825 202 SUPERFAMILY Homeodomain-like 129 197 IPR009057 -
Lsi05g00825 202 Pfam ZF-HD protein dimerisation region 52 103 IPR006456 -
Lsi05g00825 202 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Lsi05g00825 202 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Lsi05g00825 202 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 136 193 IPR006455 -
Lsi05g00825 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 107 - -
Lsi05g00825 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 131 196 - -
Lsi05g00825 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 38 107 - -
Lsi05g00825 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 131 196 - -
Lsi05g00825 202 Gene3D - 128 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00825 - - - cpep:111809080 257.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00825 Lsi-Chr5:13154551 Lsi07g00255 Lsi-Chr7:2801115 2.34E-47 dispersed
Lsi05g00825 Lsi-Chr5:13154551 Lsi08g01003 Lsi-Chr8:18507811 1.61E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25332 PF04770 ZF-HD_dimer 3.10E-28 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00825 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0