Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00846 ATGGCTTCCCATTCCCCTAACCTCGAATGTCGGATGTACGAAGCAAAGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCTTACGTCTCCCTTCTTGAGTACAACAACATCGAGGGTATGATTCTATTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGTTTAATTAAGGTTGGCCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGTTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTCGCTGAGACTATGAACATTGATTTGGAGTTAGGTAGATGGGTGTGTTCAGCTCTTGACGACTTGTATATCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACTGATCCTGACTCGGTGTTGAATTCTCTCACCCGTGAAGTCAAGGAAGCTGGTCCTGATGGACAGGAGGTAACTAAGATAGTTCCTGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGTGTTCTTCACATTAAGGAAGCAATGCGTAAAGCTGAAGCTGCTGGAAACGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCACTCTACGTCCTTACTACTCAGACACTAGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCACTGCTTGCACCGAGGCAATCGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCTGAGCACATGGCGAAGCTACGACAAGACAATGAAGAAATCAGTGGCGATGAGGATAGTGAGGAAGAGGAAGACACAGGGATGGGAGAAGTCGATGTTGAGAATGCAGGTTCTGGGATCACCGAGTAA 1065 46.38 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLELGRWVCSALDDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAITACTEAIEHHKGKLVVKETPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13879185 13884516 - Lsi05G008460.1 Lsi05g00846 663338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00846 354 Pfam Eukaryotic translation initiation factor 2 alpha subunit 140 270 IPR011488 GO:0003723|GO:0003743
Lsi05g00846 354 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 354 IPR011488 GO:0003723|GO:0003743
Lsi05g00846 354 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Lsi05g00846 354 MobiDBLite consensus disorder prediction 326 342 - -
Lsi05g00846 354 Gene3D EIF_2_alpha 215 337 IPR024055 -
Lsi05g00846 354 SUPERFAMILY eIF-2-alpha, C-terminal domain 213 329 IPR024055 -
Lsi05g00846 354 SUPERFAMILY eIF2alpha middle domain-like 94 209 IPR024054 -
Lsi05g00846 354 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Lsi05g00846 354 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 209 IPR024054 -
Lsi05g00846 354 Gene3D - 6 94 IPR012340 -
Lsi05g00846 354 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Lsi05g00846 354 SMART S1_6 19 92 IPR022967 -
Lsi05g00846 354 MobiDBLite consensus disorder prediction 319 354 - -
Lsi05g00846 354 PANTHER BNAC04G04870D PROTEIN 5 354 - -
Lsi05g00846 354 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Lsi05g00846 354 Coils Coil 316 336 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00846 K03237 - csv:101209681 633.254