Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00855 ATGAACCTCATCCCCTTCCTTCCATGGCCGAACCTCCACATGGCCCTCCTCCTCTTCTTCTTCCTTGCTTCTTCTTCACTGCTTCATTCATCCCCTGCTTCTTCACTTCCCCACAATGAAGGACGAGCGCTTATGTCGATCAAGGCCTCGTTTAGCAATGTGGCTAATGTGTTGCTTGACTGGGATGATGATCATAACCACGATTTCTGTTCATGGCGTGGAGTTTTCTGCGACAATGTTAGCCTTTCAGTTGCTGCTTTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGAAACTTACAGTCGATTGACTTGCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTTGCCCATTTGGACTTGTCCGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTAAAGCAGCTCGAGTTTTTAAATATGAAAAACAATCAGTTGACCGGTCCGATCCCTTCGACCTTGACTCAGATTCCCAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTTATGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGGTCATTGTCCTCCGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTAAGGGGAAACAATCTGACTGGCACGATACCGGATAGCATAGGAAACTGTACCAGTTTTGAAATTCTGGATATATCGTACAATCAGATCTCGGGAGAGATTCCATACAACATTGGATTTCTACAAGTGGCCACTTTATCATTACAGGGAAATAGGTTGAGTGGTAAGATTCCTGATGTCATTGGATTGATGCAGGCCCTTGCCGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGGCCAATACCGCCAATACTTGGCAACTTGTCCTACACTGGAAAATTGTATCTACACGGAAACAAGTTGACTGGGCCAATTCCTCCCGAGCTGGGCAATATGTCAAAGCTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTAAATCTTGCTAACAATTATCTTGAAGGACCCATCCCTCACAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACAATCTTAATGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACCTATTTGAACCTTTCAGCAAACAACTTCAAAGGCAGGATTCCCATTGAGCTGGGACGCATAGTAAACCTCGATACATTGGATCTATCTTGCAATTACTTCTTGGGTCCTGTTCCTGCTTCTATTGGCGATTTGGAACACCTTCTTAGCCTCAATTTGAGCAATAACCGACTTGTTGGGCCATTGCCAGCAGAATTTGGGAATCTCCGAAGTGTTCAGACTATCGATATGTCATTCAACAACTTTTCTGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTCATTTTAAACAACAACCATTTTCAAGGGAAAATACCTGATCAGCTGACTAATTGTTTTAGTCTTGCCAATCTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAACTTCTCTCGTTTCGAACCAGATAGGTACTTTATCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGATCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGTGGTTGTTTGTATGACATTTGGATTCATAGTATTGTTGTCGATGGTTATAATTGCTGTGTACAAGTCGAATCCATCAAAGCAATTGATGAAGGGTTCTAGCAAGACTGGGCAAGGCAAGCATTGTCCTCCAAGTCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTCGAGGACATTATGAGAATGACTGAGAATCTAAGCGAGAAGTACATTATTGGTTATGGAGCTTCGAGCACTGTGTACAAATGTTTGCTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTATGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCGTTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGTAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGTACAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTTTGAAGATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCGTCTTTCTGATTTCGGGATTGCCAAATGTATCCCAACTGCCAAAACACATGCATCCACTTATGTGCTTGGAACAATTGGCTACATTGATCCAGAGTATGCCCGGACCTCCCGGCTCAATGAGAAGTCTGATGTTTATAGCTTCGGCATTGTTCTTCTGGAACTACTGACTGGGAAGAAAGCTGTGGATGATGAGTCCAATTTGCATCAGCTGGTTTGTTCATATCAAATCACTTCTAACATATGTTTCTTTTATGTTTGGCTTGAATCTGAATTTATTCTCCTCATCTCTATGAACTGCCAGATATTGTCCAAGACTGATAACAATACCGTGATGGAAGCTGTTGATCCCGAGGTTTCGGTCACCTGCATTGATTTAGCCCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCACGAAGTTGCACGAGTATTGATCTCCCTCCAGCCACCACCACCTACTGTAAAACAACCTTCATTCCCCACAAAAACATTGGATTATGCACAATTTGTGATCGAAAAGGGTCAAAATCGAAACTTGAAAGGGCAGGAGGAGCAGCAGAAGTCAGATGCGAATACTTCGGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTTATGTCTGAACAGCACAGTTTGAATCAATAA 3093 43.0 MNLIPFLPWPNLHMALLLFFFLASSSLLHSSPASSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDLQGNKLTGQIPDEIGNCGLLAHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVMQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPIELGRIVNLDTLDLSCNYFLGPVPASIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHFQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPDRYFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMTFGFIVLLSMVIIAVYKSNPSKQLMKGSSKTGQGKHCPPSLVVLHMDMAIHTFEDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETVGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEARLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLVCSYQITSNICFFYVWLESEFILLISMNCQILSKTDNNTVMEAVDPEVSVTCIDLAHVRKTFQLALLCTKHNPSERPTMHEVARVLISLQPPPPTVKQPSFPTKTLDYAQFVIEKGQNRNLKGQEEQQKSDANTSDARWFVRFGEVMSEQHSLNQ 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14265405 14271253 + Lsi05G008550.1 Lsi05g00855 663347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00855 1030 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Lsi05g00855 1030 Gene3D Ribonuclease Inhibitor 202 311 IPR032675 -
Lsi05g00855 1030 Gene3D Ribonuclease Inhibitor 37 201 IPR032675 -
Lsi05g00855 1030 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Lsi05g00855 1030 SUPERFAMILY L domain-like 38 321 - -
Lsi05g00855 1030 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Lsi05g00855 1030 Pfam Leucine Rich Repeat 179 197 IPR001611 GO:0005515
Lsi05g00855 1030 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 904 1003 - -
Lsi05g00855 1030 SUPERFAMILY L domain-like 319 576 - -
Lsi05g00855 1030 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 31 879 - -
Lsi05g00855 1030 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 904 1003 - -
Lsi05g00855 1030 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 31 879 - -
Lsi05g00855 1030 Gene3D Transferase(Phosphotransferase) domain 1 741 968 - -
Lsi05g00855 1030 Gene3D Phosphorylase Kinase; domain 1 630 740 - -
Lsi05g00855 1030 SUPERFAMILY Protein kinase-like (PK-like) 643 962 IPR011009 -
Lsi05g00855 1030 ProSiteProfiles Protein kinase domain profile. 665 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00855 1030 CDD STKc_IRAK 671 964 - -
Lsi05g00855 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Lsi05g00855 1030 Pfam Protein kinase domain 668 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00855 1030 SMART serkin_6 665 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00855 1030 SMART LRR_typ_2 177 201 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 416 440 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 296 320 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 464 487 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 344 368 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 153 176 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 512 536 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 105 129 IPR003591 -
Lsi05g00855 1030 SMART LRR_typ_2 225 249 IPR003591 -
Lsi05g00855 1030 Pfam Leucine rich repeat 442 501 IPR001611 GO:0005515
Lsi05g00855 1030 Gene3D Ribonuclease Inhibitor 312 585 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01939 Lsi-Chr2:25319008 Lsi05g00855 Lsi-Chr5:14265405 1.84E-129 dispersed
Lsi04g01384 Lsi-Chr4:21632518 Lsi05g00855 Lsi-Chr5:14265405 8.09E-23 dispersed
Lsi05g00855 Lsi-Chr5:14265405 Lsi07g00100 Lsi-Chr7:1134112 3.23E-158 dispersed
Lsi09g00524 Lsi-Chr9:5519416 Lsi05g00855 Lsi-Chr5:14265405 2.25E-135 dispersed
Lsi05g00855 Lsi-Chr5:14265405 Lsi05g00800 Lsi-Chr5:11817984 1.76E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83646 PF00069 Pkinase 4.70E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00855 K20718 - csv:101213139 1816.2