Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00972 ATGTCGGCACAAGTGGTGGGTTGGCCACCAATAAGGTCGTATAGAAAGAAGAGGTTGGGGGTTCAAAAGGGGAGCAAAGAGGAAGAAAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGGTTTGTGAAGGTTAGCCTTGATGGTGCACCTTATCTTCGTAAGGTTGACTTGAACATCTACAACAGCTACAATCAACTTTCTCATGCCTTAGCCAAATTCTTTGGTGCCTTCACCATTGGAGCTGAGTGGAAGATGAGTTTAATATCACAAAATGCTGCTGTAATTAGTAGTATTGAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCGTTGAGAAATGTAGATGCTAGTGATGTAGAAAACTATGGTCTAGATACTACTAGGGCAAAGAAGAGAAAGAAAGAACACAAAAAAGAAGATGAAGAACTAGTAAAAGACCAACAGAAGGAAATGAAGAAGCTCGAAAACTTTCTTTTTGGATCGCTCAATTCTCCTGTTGAATTTGGGAAGGATGAAGAGCAAAATGGTTTTAGTTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCTCCTAGATGAGAGTACGGATAAGGAGGAACCTCAGCAAAGGAAACCAGTATGGGTCGATGAGGAAGAGGACAAGGCCACAGTTAATATTACTAATGTTAGCAGACTGAGAAAGTTGAGGAAGGAAGAAGATAAGAATTCGATTTCTGGCTCAGAGTACGTGTCGAGACTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCACAATCCACGGGTGATAGTGATGATGATGATCGATCATCAGATGCTGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACAAGTGAGAATCTTGTTGTAAAGAGAGGTGCAAAATTGTTGCCTGGTCTTCTTGAATACTCAAGACTTGTAGATGCTAATGCAGAGGAGCCATCTAATGGTCCTATCAATTCGGTTCAGTTTCATCGCAACGCTCAGTTACTACTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGGAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCCATACGAAAGGCATCCTTTTTGCCTGATGGATCTCAGGTTATCATAGCTGGAAGGAGAAAGTTCTTCTATAGCCTCGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTAGAGAGGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACGGTCGCATTTATTGGTAATGAAGGCTATATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATCGGGACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACGACAGCTACTGAGCTCCGGTGGTGACGGGCAGGTCTACCACTGGGATTTGCGAACAAGAACATGCATCCACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCACTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGCATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGCAAGAAGAAGCCATTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTCAAATTCAATCATGATGCTCAAATATTGGCCATCTGTTCAAGAAGGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACTGTATTTTCGAACTGGCCGCCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTGGGAAATGCTGCTGGAAAGAAGAAGAAGCAGAAGAAGAAGAGCAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTTATCCCTGTGGAATCTCAGGTGGGTTCGGTGAAGAAGAAGAAGAAGCAGACAACGACGACGAAGAAGAAGAATACTGCGATTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGGGTTCAGATTAATGCCAGAGATCTTCGGCTTCTTGATCCTCTGTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTCAATTTGGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCCTATACCAAGGACAAGGGGAGGAAGAAGAGCCTTCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTTGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGGAACTTGGATCGAGTGCGCAAACTGAAGAGTGCAATGACAAGATTGACAAATCGGGTGCAAAAGGTTAGAGATGAACTCGAACAACTTCTGGATGACGATGACGACATGGCGGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTGTGGGACTCCAATCTGGTTTCTTGCTTCTCCCAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGCAATTACTATTCGAGGAGAGAATGATGTTGAGGAACTAGAAATGCTACTCGAGTTGCGGGAGTACATCGATGACACAGAGGATTACATCAATATTCAGGTGGTCATCCTGACAGGAGTAGTTTGTGCAACCATTTATATGTCACTAAGCTCATATGCGCGATACAAAGGTCTCGTTGGATCTTGA 2955 42.88 MSAQVVGWPPIRSYRKKRLGVQKGSKEEESDEEKKVVKVRFVKVSLDGAPYLRKVDLNIYNSYNQLSHALAKFFGAFTIGAEWKMSLISQNAAVISSIEKVTGENIVGSSSPLRNVDASDVENYGLDTTRAKKRKKEHKKEDEELVKDQQKEMKKLENFLFGSLNSPVEFGKDEEQNGFSSEEKVPALYIMDRSANNSLSAYEDDFGLLDESTDKEEPQQRKPVWVDEEEDKATVNITNVSRLRKLRKEEDKNSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDDDDRSSDAENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGRQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNHDAQILAICSRRKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKKKKQKKKSNNVCGIEILASEMAGDGFVIPVESQVGSVKKKKKQTTTTKKKNTAISRSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEVLLRDPMDENVVPIVEELQRRLPSTNSLYQGQGEEEEPSTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGCGTPIWFLASPKDYSKMSKTSRASAITIRGENDVEELEMLLELREYIDDTEDYINIQVVILTGVVCATIYMSLSSYARYKGLVGS 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16940257 16965333 + Lsi05G009720.1 Lsi05g00972 663464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00972 984 Gene3D - 681 757 - -
Lsi05g00972 984 Pfam WD domain, G-beta repeat 475 509 IPR001680 GO:0005515
Lsi05g00972 984 Pfam WD domain, G-beta repeat 525 552 IPR001680 GO:0005515
Lsi05g00972 984 Gene3D Magnesium transport protein CorA, transmembrane region 763 958 - -
Lsi05g00972 984 PANTHER U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG 131 641 - -
Lsi05g00972 984 Pfam AUX/IAA family 2 82 IPR033389 -
Lsi05g00972 984 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 518 IPR001680 GO:0005515
Lsi05g00972 984 PANTHER WD-REPEAT PROTEIN-RELATED 131 641 IPR045161 GO:0006364
Lsi05g00972 984 Gene3D - 329 643 IPR015943 GO:0005515
Lsi05g00972 984 Gene3D - 34 149 - -
Lsi05g00972 984 MobiDBLite consensus disorder prediction 272 296 - -
Lsi05g00972 984 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 512 - -
Lsi05g00972 984 SMART WD40_4 560 601 IPR001680 GO:0005515
Lsi05g00972 984 SMART WD40_4 339 379 IPR001680 GO:0005515
Lsi05g00972 984 SMART WD40_4 512 552 IPR001680 GO:0005515
Lsi05g00972 984 SMART WD40_4 471 509 IPR001680 GO:0005515
Lsi05g00972 984 Coils Coil 132 159 - -
Lsi05g00972 984 Coils Coil 852 879 - -
Lsi05g00972 984 SUPERFAMILY WD40 repeat-like 350 640 IPR036322 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00972 Lsi-Chr5:16940257 Lsi06g00847 Lsi-Chr6:17822100 1.72E-20 dispersed
Lsi08g00899 Lsi-Chr8:17351890 Lsi05g00972 Lsi-Chr5:16940257 2.30E-29 transposed
Lsi10g00524 Lsi-Chr10:7473575 Lsi05g00972 Lsi-Chr5:16940257 0 transposed
Lsi05g00972 Lsi-Chr5:16940257 Lsi05g01663 Lsi-Chr5:24300871 1.48E-20 wgd
Lsi05g00972 Lsi-Chr5:16940257 Lsi09g01276 Lsi-Chr9:20562789 4.86E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25337 PF02309 AUX_IAA 8.30E-29 CL0072 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00972 K14553 - csv:101208908 938.332