Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00976 ATGGAAGAGGTTGAAGAAGCTAACAAAGCAGCCATAGAGAGCTGCCATGGAGTTTTGAATCTTTTAGTTCAACCTCCTCAAGACCAACTTCATTTCAGGAATTTAATGGTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTGATTTCTCTTTTAAATTCTGATTTTGGTCATGCAAGAGTTAGAAAATTCAACAAGATTATTCCTCTCCCTTTGCCTCAAAAATCCCTCTTAGATTCCCCAAATTACACTCCACATCCTCCAAACAAAAATCTTTACCCTTTTCACTCTGGTTTTAATGGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTAGAATTGACTCCAAATGACAAGAATTCCCTCCAAATTCCCAAACAATCTCCATCTTTAAACTTCACCTTCCCTCAGCAGCAGCAACAACAACAACAGAGGATTTTGGCTCATCAGAAACAAATGAAACAGCAAGCAGAGATGATGTTTCTTAGGAATAACAGTGGGATGAATCTGAATTTTGACTCATCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCGCTGACGGTAGTTCGTTCCATTTAATCGGACCGTCGACGACGACGACGTCCGCCGATAACAAGAGGAAGTTTTCTGCAAGGGGAGATGAAGGGAGCTTGAAATGTGGAAGCACTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTACCTGCTATAAGTAACAAACTTGCAGATATCCCTTCTGATAATTTTTCATGGAGAAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCGGCGAGAAAGCATGTTGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACGTACGAAGGAGAACACAATCACCCGAAAGTGTTGACACAATCTGCACACACTTAG 1005 40.8 MEEVEEANKAAIESCHGVLNLLVQPPQDQLHFRNLMVETKEAVFKFKKVISLLNSDFGHARVRKFNKIIPLPLPQKSLLDSPNYTPHPPNKNLYPFHSGFNGKVSIFLGNPDLELTPNDKNSLQIPKQSPSLNFTFPQQQQQQQQRILAHQKQMKQQAEMMFLRNNSGMNLNFDSSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSTTTTSADNKRKFSARGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDNFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKVLTQSAHT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17003245 17005703 + Lsi05G009760.1 Lsi05g00976 663468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00976 334 Gene3D WRKY domain 250 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00976 334 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 2 334 - -
Lsi05g00976 334 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00976 334 Pfam WRKY DNA -binding domain 268 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00976 334 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 334 IPR044810 GO:0003700
Lsi05g00976 334 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00976 334 Pfam Plant zinc cluster domain 230 264 IPR018872 -
Lsi05g00976 334 SUPERFAMILY WRKY DNA-binding domain 264 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00960 Lsi-Chr1:7792775 Lsi05g00976 Lsi-Chr5:17003245 1.05E-54 dispersed
Lsi04g02198 Lsi-Chr4:29020887 Lsi05g00976 Lsi-Chr5:17003245 3.72E-53 dispersed
Lsi05g00976 Lsi-Chr5:17003245 Lsi10g00187 Lsi-Chr10:3136522 1.16E-51 dispersed
Lsi02g02233 Lsi-Chr2:28762750 Lsi05g00976 Lsi-Chr5:17003245 2.72E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25338 PF03106 WRKY 1.50E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00976 - - csv:101214847 562.377