Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00991 ATGGGTGAAAAATTTTGGGCGAATGAAGAAAAAAGGGTTGTGGTGGAATCAGTTGTTGGTAGTGAAGCTTGTGAGTTCTTGATTTCGTTGGCATCTAGCAATATCTTACCACCGGATTCATTGCAATTTTCTCTTGGTGACTTGAGTGTGAATCAGGGGTTAAGCCAAATTTTGGATGGTTCAAGTTGGAATTATGCAATTTTTTGGCGTGTGGTTAGCTTGAAATCTGGGGCTTTAGCTTTGATTTGGGGTGATGGGAACTGTCATGACTCAAAGATTGAGATTGGAATTTCTGGTGGGGATGCTCAAGGAGGGAAAAAAGAGGAATTGAAGAGACAAGTGCTTCAAATGCTTCAATCCTCTTTTGGAGGGTCTGATGAAGATGGATATGGGGCAAGGAGAGACGAAGCGTCGGATATGGAGATGCTTTACTTAACTTCGAAGTATTACAAGTTTATGTGCGACTCTGGGAACAGTCTTGGGGAGTCGTACAAATCCGGTAAGTCGATATGGGCTTCGGATGTAACGAGTTGTTTGCGTAATTACCAATCGAGAGGATTTTTAGCTAAAGTGGCTGGTTTCCAGACATTGGTGTTTGTACCAGTAAAGTTGGGAGTTGTTGAACTTGGATCTGTTAAATCAATTCCTGAAGATCAGGGTGTTCTAGAATTGGTTAAAACTGCCTTTGGGGGATCAAATACTGCCCAATTGAAGGCCTTCCCAAGGATCTTTGGACATGAACTAAGTTTAGGTGGAACAAAACCTCGATCACTTAGTATTAATTTTTCACCAAAGTTGGAAGATGATACAAATTTTGCTTCAGAAGGATATGAGATGCAAGGTTTAGGTGGTAATCATGTATTTGGGAACTCTTCAAACGGTTGTCGAGGCGATGATAATGATGCAAAGATGTTTCCACATGGAAACCAAGAAGTTGTGGGAGGTTTCAGTGCTCAAACAAGGCTTTCGACTGTGGAGTTCCCGAGGGATGAGTCGTCTCCTCAAGGAGATGACAGAAAACCTAGGAAGAGAGGGAGAAAACCTGCTAATGGGAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGACGTGAGAAACTTAACCAACGATTCTATGCATTAAGGGCTGTTGTCCCAAATATCTCTAAGATGGATAAGGCTTCTTTGCTCGGCGATGCTATTACCTATATTACCGATCTCCAAATGAAAATCAAGGTTATGGAGACTGAAAAACAGATTGCTAATGGCAGGGATAAAAACACAGAGATCGATTTTCACGCAAGAGAAGAGGATGCTGTTGTGAGGGTGAGTTGTCCGTTGGATTCGCACCCTGTTTCTAAAGTAATCAAAACATTTAGAGAACATCAAATTGAAGCCCAAGAATCCAATGTTACGACCAGCAACAACAACGAAAAAGTTATTCACTCATTCTCCATTAGAACTGAAGGTGGTGCTGCAGAACAATTGAAGGAGAAGCTGGTGGCTGCCCTATCAAAATGA 1506 42.03 MGEKFWANEEKRVVVESVVGSEACEFLISLASSNILPPDSLQFSLGDLSVNQGLSQILDGSSWNYAIFWRVVSLKSGALALIWGDGNCHDSKIEIGISGGDAQGGKKEELKRQVLQMLQSSFGGSDEDGYGARRDEASDMEMLYLTSKYYKFMCDSGNSLGESYKSGKSIWASDVTSCLRNYQSRGFLAKVAGFQTLVFVPVKLGVVELGSVKSIPEDQGVLELVKTAFGGSNTAQLKAFPRIFGHELSLGGTKPRSLSINFSPKLEDDTNFASEGYEMQGLGGNHVFGNSSNGCRGDDNDAKMFPHGNQEVVGGFSAQTRLSTVEFPRDESSPQGDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVMETEKQIANGRDKNTEIDFHAREEDAVVRVSCPLDSHPVSKVIKTFREHQIEAQESNVTTSNNNEKVIHSFSIRTEGGAAEQLKEKLVAALSK 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17343187 17344692 + Lsi05G009910.1 Lsi05g00991 663483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00991 501 MobiDBLite consensus disorder prediction 331 364 - -
Lsi05g00991 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Lsi05g00991 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 415 IPR036638 GO:0046983
Lsi05g00991 501 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Lsi05g00991 501 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 229 IPR025610 -
Lsi05g00991 501 MobiDBLite consensus disorder prediction 324 364 - -
Lsi05g00991 501 Gene3D - 346 418 IPR036638 GO:0046983
Lsi05g00991 501 PANTHER MYC 1 501 IPR045084 GO:0003700|GO:0006355
Lsi05g00991 501 CDD bHLH_AtAIB_like 350 415 - -
Lsi05g00991 501 SMART finulus 359 408 IPR011598 GO:0046983
Lsi05g00991 501 PANTHER TRANSCRIPTION FACTOR BHLH3 1 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00991 Lsi-Chr5:17343187 Lsi05g02130 Lsi-Chr5:28132824 6.48E-90 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25340 PF14215 bHLH-MYC_N 1.30E-37 CL0161 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00991 - - csv:101219851 931.784