Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01003 ATGGCTTCTTCTTCTTCATCTTCCTCTCCAAATACTAGCATGTCAGGCGGCAGCGGTGGCGGCGGCTCGCCTTGTGGAGCATGTAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGTTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGCTGTGTTGCTCATATTTTTGCTCTCCAACAACAGCTGATGCAAGCGAAGGCTCAACTTGCACAAACCCTGATAGATTCAGGAGGTAATATGGAGATTCAATGGACAGGAAACTACTTCAATAATTACAATCTCTCCAATGGAATTCCAAATAATTATCAAAGTGATCAGATTATGAACAACCCAGCAGTTTCACCACAAAGCTCTCTTGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATCAGCAAAATCATTTTCATGAAAGCCAAAGCAGATCACCAGATGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGATCTTGGGGAACTCCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA 687 40.17 MASSSSSSSPNTSMSGGSGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQLMQAKAQLAQTLIDSGGNMEIQWTGNYFNNYNLSNGIPNNYQSDQIMNNPAVSPQSSLESAANNDEALLFINQQNHFHESQSRSPDESQFLQPFPRKKLPSSHDLGELQALALRMMRN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17497304 17498819 + Lsi05G010030.1 Lsi05g01003 663495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01003 228 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Lsi05g01003 228 MobiDBLite consensus disorder prediction 1 19 - -
Lsi05g01003 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 14 227 - -
Lsi05g01003 228 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 227 - -
Lsi05g01003 228 MobiDBLite consensus disorder prediction 1 21 - -
Lsi05g01003 228 Pfam Lateral organ boundaries (LOB) domain 24 120 IPR004883 -
Lsi05g01003 228 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01003 Lsi-Chr5:17497304 Lsi09g01901 Lsi-Chr9:27864606 2.44E-46 dispersed
Lsi05g01003 Lsi-Chr5:17497304 Lsi05g01004 Lsi-Chr5:17507404 3.24E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25343 PF03195 LOB 2.10E-36 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01003 K13944 - csv:101214521 336.265